Yu Michael M - OmicsDI

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Unknown (173)
Transcriptomics (94)
Genomics (75)
Proteomics (29)
Metabolomics (6)
Multiomics (2)

Organisms

Homo sapiens (120)
Mus musculus (34)
Schizophyllum commune H4-8 (12)
Mycobacterium tuberculosis SP7 (12)
Oryza sativa Japonica Group (12)
Candidatus Endoriftia persephonae (12)
Mycobacterium tuberculosis SP10 (12)
Mycobacterium tuberculosis SP13 (12)
Mycobacterium tuberculosis SP22 (12)
Chlamydomonas reinhardtii (12)
Pyricularia oryzae P131 (12)
Enterococcus mundtii CRL35 (12)
Oncorhynchus tshawytscha (12)
Pseudomonas canadensis (12)
Strongylocentrotus purpuratus (12)
Influenza A virus (A/California/04/2009(H1N1)) (12)
Homo (12)
Pseudomonas aeruginosa PAO1H2O (12)
Human alphaherpesvirus 1 strain 17 (12)
Saccharomyces cerevisiae (6)
Arabidopsis thaliana (4)
Mycobacterium tuberculosis (2)
Rattus norvegicus (2)
Saccharomyces mikatae (1)
Xenopus laevis (1)
Pseudomonas aeruginosa PAO1 (1)
Ovis aries (1)
Pseudomonas aeruginosa (1)
Gallus gallus (1)
Capsella rubella (1)

Repository

biostudies-arrayexpress (96)
EGA (74)
pride (12)
MassIVE (11)
MetaboLights (5)
iProX (4)
GNPS (1)
jPOST (1)
PeptideAtlas (1)

Tissue

Epithelial cell (3)
Cell culture (3)
Others (1)
Atherosclerotic plaque (1)
Plant cell (1)
Heart (1)
Whole body (1)
Lung (1)
Permanent cell line cell (1)

Disease

Acute myeloid leukemia (2)
Colorectal cancer recurrence-free (1)
Glioblastoma (1)
Alveolar soft part sarcoma (1)
Non-small cell lung carcinoma (1)
Atherosclerosis (1)

Technology Type

Mass Spectrometry (12)
Affinity purification coupled with mass spectrometry proteomics (4)
Shotgun proteomics (4)
NMR spectroscopy (3)
Data-dependent acquisition (3)
Bottom-up proteomics (3)
Affymetrix OncoScan FFPE Express (1)
Illumina_670k - Illuminus, Affymetrix 6.0, Illumina 1.2M (1)
Mass spectrometry assay (1)
Mass spectrometry (1)
DiaPASEF (1)
SWATH MS (1)
Data-independent acquisition (1)
Gel-based experiment (1)

Instrument Platform

Illumina NovaSeq 6000 (23)
Illumina HiSeq 2500 (6)
Illumina HiSeq 4000 (5)
LTQ FT (2)
MaXis (2)
Q Exactive (2)
Orbitrap Fusion Lumos (2)
Nuclear Magnetic Resonance (NMR) - (2)
Liquid Chromatography MS - positive - reverse phase (2)
10X Genomics Chromium (1)
GenePix 4000B [Axon Instruments] (1)
Illumina HiSeq X (1)
Illumina HiSeq 3000 (1)
NextSeq 500 (1)
LTQ Orbitrap Elite (1)
LTQ (1)
TripleTOF 5600 (1)
Orbitrap Fusion (1)
LTQ Orbitrap (1)
Orbitrap Exploris 480 (1)
Bruker (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2021 (17)
2020 (12)
2022 (11)
2015 (10)
2012 (9)
2013 (8)
2011 (8)
2010 (8)
2014 (7)
2023 (6)
2008 (5)
2024 (4)
2018 (4)
2026 (4)
2016 (3)
2007 (3)
2019 (2)
2009 (2)
2005 (1)
2017 (1)
2025 (1)

UNIPROT ID/AC

Q9UN19 (1)
Q9NQ25 (1)
Q9HBA0 (1)
Q9H422 (1)
Q9H2X6 (1)
Q96NY8-2 (1)
Q96DU3 (1)
Q8NHJ6-3 (1)
Q8NHJ6 (1)
Q8N5H7 (1)
Q8IX19 (1)
Q86Z02 (1)
Q7Z6J2 (1)
Q13291 (1)
P58872 (1)
P57739 (1)
P56597 (1)
P54253 (1)
P35318 (1)
P29034 (1)
P20963 (1)
P11686 (1)
P07766 (1)
O96009 (1)
O95436-2 (1)
O95436 (1)
O95171 (1)
O43609 (1)
O15389 (1)
O00501 (1)

ENSEMBL ID

ENSG00000170477 (1)

CHEBI ID

CHEBI:26986 (3)
CHEBI:17234 (3)
CHEBI:25017 (3)
CHEBI:27266 (3)
CHEBI:16449 (3)
CHEBI:26271 (2)
CHEBI:18132 (2)
CHEBI:18186 (2)
CHEBI:28300 (2)
CHEBI:24898 (2)
CHEBI:15428 (2)
CHEBI:15741 (2)
CHEBI:78320 (2)
CHEBI:82356 (1)
CHEBI:91112 (1)
CHEBI:91275 (1)
CHEBI:15361 (1)
CHEBI:57606 (1)
CHEBI:24996 (1)
CHEBI:30089 (1)
CHEBI:27082 (1)
CHEBI:18139 (1)
CHEBI:16454 (1)
CHEBI:33984 (1)
CHEBI:17665 (1)
CHEBI:134594 (1)
CHEBI:28260 (1)
CHEBI:15688 (1)
CHEBI:33942 (1)
CHEBI:29987 (1)

Metabolite Name

O-Phosphocholine (2)
Acetate (2)
Glutamate (2)
Leucine (2)
Aspartate (2)
Glycine (2)
Valine (2)
Lactate (2)
Tyrosine (2)
Alanine (2)
Threonine (2)
Proline (2)
Isoleucine (2)
Glutamine (2)
Glucose (2)
Pyruvate (2)
Phosphatidylcholine (16:0/18:1) (1)
Glucose 6 phosphate (1)
O-Acetylcholine (1)
N-butyl-N-(3-carboxypropyl)nitrosamine (1)
N-butyl-N-(4-hydroxybutyl)nitrosamine (1)
3-Hydroxybutyrate (1)
Adenosine monophosphate (1)
Sn-Glycero-3-Phosphocholine (1)
Butyrate (1)
Propionate (1)
Trimethylamine (1)
Ethanol (1)
3-Hydroxyisovalerate (1)
Fucose (1)

Study type

Transcription profiling by array (42)
RNA-seq of coding RNA (18)
RNA-seq of coding RNA from single cells (12)
ATAC-seq (3)
RNA-seq of non coding RNA (3)
Unknown experiment type (2)
ChIP-chip by tiling array (2)
Methylation profiling by array (2)
Cell line - Single-cell sequencing (1)
RNA-seq of non coding RNA from single cells (1)
Human - Single-cell sequencing (1)
Human - High-throughput sequencing (1)
High-throughput sequencing (1)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
Other (1)
ScATAC-seq (1)
ChIP-seq (1)
MicroRNA profiling by array (1)

Release Date

2021 (39)
2022 (27)
2023 (24)
2024 (22)
2025 (21)
2015 (16)
2020 (13)
2012 (13)
2016 (12)
2013 (11)
2019 (10)
2018 (10)
2014 (10)
2011 (10)
2010 (9)
2008 (8)
2017 (6)
2009 (4)
2007 (2)
2005 (1)
2026 (1)

Lab affiliation

Discovery Proteomics, Genentech (1)
Department of Pediatric Respiratory Medicine, Immunology and Critical Care Medicine, Charite ‐ Universitatsmedizin, Germany; German Center for Lung Research (DZL), Associated Partner Site, Germany; Berlin Institute of Health (BIH) at Charité - Universitätsmedizin Berlin, Germa (1)
Structural Plant Biology Laboratory, Department of Plant Sciences, University of Geneva, 1211 Geneva, Switzerland (1)
Department of Plant Sciences Faculty of Science Science III University of Geneva 30 Quai E. Ansermet 1211 Geneva Switzerland (1)
Program in Cell Biology Hospital For Sick Children, Toronto, SPARC BioCentre Hospital For Sick Children, Toronto, 8Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada (1)
Canada's Michael Smith Genome Sciences Centre, BC Cancer Agency, Vancouver V5Z 1L3, Canada (1)
Biochemistry and Molecular Biology, Michael Smith Laboratories, University of British Columbia, Canada (1)
The Hospital for Sick Children (1)
Program in Cell Biology, SPARC BioCentre, Hospital For Sick Children, Toronto; Department of Molecular Genetics, University of Toronto, Toronto, Ontario, Canada. (1)
IBBP, WWU Muenster (1)
Department of Biomedical Sciences, University of Copenhagen, Denmark (1)
Department of Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390 (1)

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Transcriptional profile comparison of M. tuberculosis PDIM spontaneous mutants

Transcriptional profile comparison among PDIM positive and negative isolates. Standard in vitro exponential phase cultures of M. tuberculosis H37Rv ATCC27294 were plated on 7H11 plates. Individual colonies were sub-cultured in 7H9 broth and metabolically labeled with [14C] propionic acid. The apolar...

ORGANISM(S): Mycobacterium tuberculosis

2010-05-16 | E-GEOD-17234 | biostudies-arrayexpress

International fisheries threaten globally endangered sharks in the Eastern Tropical Pacific Ocean: the case of the Fu Yuan Yu Leng 999 reefer vessel seized within the Galapagos Marine Reserve.

Not available

S-EPMC8298506 | biostudies-literature

Selectively triggered: ROS-activated Michael acceptor prodrug strategy to enhance tumor targeting efficacy.

Not available

S-EPMC12319579 | biostudies-literature

Nanopore Sequencing Reveals Novel Targets for Detection and Surveillance of Human and Avian Influenza A Viruses.

Not available

S-EPMC7180252 | biostudies-literature

Transcriptional profile of Beijing/East-Asian Mycobacterium tuberculosis isolates

Transcriptional profile comparison among Beijing and non-Beijing M. tuberculosis isolates. Three M. tuberculosis strains were compared. The laboratory reference strain, H37Rv, belongs to the Euro-American or lineage 4. Two clinical isolates of the East-Asian or lineage 2: 98_1663 is a pre-Beijing or...

ORGANISM(S): Mycobacterium tuberculosis

2016-06-24 | E-GEOD-83677 | biostudies-arrayexpress

Site-Specific Conversion of Cysteine in a Protein to Dehydroalanine Using 2-Nitro-5-thiocyanatobenzoic Acid.

Not available

S-EPMC8125731 | biostudies-literature

Financial Concerns About Participation in Clinical Trials Among Patients With Cancer.

Not available

S-EPMC4872013 | biostudies-literature

Phase II trial of cetuximab with or without paclitaxel in patients with advanced urothelial tract carcinoma.

Not available

S-EPMC3454772 | biostudies-literature

Mild polyaddition and polyalkylation based on the carbon-carbon bond formation reaction of active methylene.