Yu Paul P - OmicsDI

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Genomics (72)
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Homo sapiens (96)
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Organisms

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Repository

EGA (71)
biostudies-arrayexpress (32)
pride (6)
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Disease

Disease free (3)
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Technology Type

Mass Spectrometry (6)
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2015 (9)
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2011 (5)
2010 (4)
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2013 (3)
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CHEBI ID

CHEBI:15428 (2)
CHEBI:15676 (2)
CHEBI:15978 (2)
CHEBI:16010 (2)
CHEBI:16359 (2)
CHEBI:16411 (2)
CHEBI:16449 (2)
CHEBI:16525 (2)
CHEBI:16914 (2)
CHEBI:17033 (2)
CHEBI:17234 (2)
CHEBI:17268 (2)
CHEBI:17521 (2)
CHEBI:17754 (2)
CHEBI:17822 (2)
CHEBI:18012 (2)
CHEBI:18186 (2)
CHEBI:18237 (2)
CHEBI:22599 (2)
CHEBI:22653 (2)
CHEBI:22660 (2)
CHEBI:24809 (2)
CHEBI:24898 (2)
CHEBI:25017 (2)
CHEBI:26078 (2)
CHEBI:26836 (2)
CHEBI:26984 (2)
CHEBI:26986 (2)
CHEBI:27266 (2)
CHEBI:27432 (2)

Metabolite Name

Alanine (2)
Allantoin (2)
Arabinose (2)
Asparagine (2)
Biliverdin (2)
Glucose (2)
Glutamine (2)
Glycerol (2)
Glycine (2)
Isoleucine (2)
Leucine (2)
Myo-inositol (2)
Phenylalanine (2)
Phosphate (2)
Serine (2)
Threonine (2)
Tryptophan (2)
Tyrosine (2)
Valine (2)
(R)-3-hydroxybutyrylcarnitine (1)
1,2-bis-O-Sinapoyl-beta-D-glucoside (1)
1-Isothiocyanato-6-(methylthio)hexane (1)
1-dimethylisopropylsilyloxy-3-methylbut-2-ene (1)
1-linoleoyl-GPA (18:2)* (1)
1-methyl-4-imidazoleacetate (1)
1-methylhistidine (1)
1-methylnicotinamide (1)
10-OPDA (1)
12,13-DiHOME (1)
12,13-Epoxylinolenate (1)

First Public Date

2013 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (19)
Unknown experiment type (5)
RNA-seq of coding RNA (3)
Comparative genomic hybridization by array (2)
Other (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2021 (30)
2025 (29)
2024 (29)
2023 (24)
2015 (20)
2022 (18)
2019 (17)
2020 (15)
2016 (13)
2017 (13)
2014 (12)
2011 (8)
2013 (7)
2018 (7)
2012 (5)
2010 (4)
2008 (3)
2009 (2)
2026 (1)
2007 (1)
2005 (1)

Lab affiliation

Wiita Lab, Department of Laboratory Medicine, University of California San Francisco, USA (2)
Cambridge Institute of Therapeutic Immunology and Infectious Disease, Univeristy of Cambridge, UK (1)
Department of Cellular and Molecular Pharmacology University of California San Francisco (UCSF) San Francisco, CA 94158 USA (1)
Division of Molecular Pathology Molecular and Systems Oncology Team The Institute of Cancer Research 237 Fulham Road, SW3 6JB London United Kingdom (1)
Howard Hughes Medical Institute, Senator Paul D. Wellstone Muscular Dystrophy Specialized Research Center, Department of Molecular Physiology and Biophysics and Department of Neurology, Roy J. and Lucille A. Carver College of Medicine, The University of Iowa; Iowa City, Iowa, 52242; USA. (1)

Tags

xref:PubMed:21816880 (1)
pathogen (1)
pathogen:bacterium (1)

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[E-MTAB-706] Quantitative RNA-seq analysis of the transcriptome of Campylobacter jejuni

RNA-seq analysis of the transcriptome of wild type C.jejuni NCTC11168, and of an rpoN mutant of the same strain, both grown in vitro. ArrayExpress Release Date: 2011-06-14 Publication Title: Quantitative RNA-seq analysis of the transcriptome of Campylobacter jejuni Publication Author List: Roy R. Ch...

ORGANISM(S): Campylobacter jejuni

2011-07-14 | GSE30621 | GEO

Positron emission tomography/computed tomography identification of clear cell renal cell carcinoma: results from the REDECT trial.

Not available

S-EPMC5795663 | biostudies-literature

Transcription profiling of human nasopharyngeal carcinoma vs control

Nasopharyngeal carcinoma is an Epstein-Barr virus-associated epithelial cancer with high prevalence in Southeast Asia. mRNA expression levels were measured for essentially all human genes and all latent Epstein-Barr virus (EBV) genes in nasopharyngeal carcinoma tissue samples and normal nasopharynge...

ORGANISM(S): Homo sapiens

2008-10-25 | E-GEOD-12452 | biostudies-arrayexpress

Campylobacter jejuni

[E-MTAB-706] Quantitative RNA-seq analysis of the transcriptome of Campylobacter jejuni

PRJNA144537 | ENA

Transcriptomic analysis of inter- and intra-patient variation in human iPSC cardiomyocytes: Platform for precision medicine to predict drug toxicity

In the present study we created and analyzed cardiomyocytes from two separate iPSC clones from the fibroblasts of five different female individuals and two male individuals, using footprint-free Sendai virus RNA-seq of iPSC cardiomyocytes, Ampli-seq of heart left ventricle and iPSC cardiomyocytes (w...

ORGANISM(S): Homo sapiens

2016-08-24 | E-GEOD-83668 | biostudies-arrayexpress

Lenalidomide Maintenance After Autologous Stem-Cell Transplantation in Newly Diagnosed Multiple Myeloma: A Meta-Analysis.

Not available

S-EPMC5652871 | biostudies-literature

A New Record of Penicillium cainii from Soil in Korea.

Not available

S-EPMC3714440 | biostudies-literature

Antibacterial Monoclonal Antibodies Do Not Disrupt the Intestinal Microbiome or Its Function

Antibiotics revolutionized medicine, however, it is now clear that broad-spectrum antibiotics alter the composition and function of the host’s microbiome. The microbiome plays a key role in human health and its perturbation is increasingly recognized as contributing to many human diseases. Wide spre...

2021-01-11 | MTBLS1257 | MetaboLights

Determinants in Initial Treatment Choice for Diabetic Macular Edema.

Not available

S-EPMC6875609 | biostudies-literature

Six species of penicillium associated with blue mold of grape.

Not available

S-EPMC3763169 | biostudies-literature