Yu Vincent V - OmicsDI

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Unknown (107)
Genomics (60)
Transcriptomics (5)
Metabolomics (2)
Proteomics (1)

Organisms

Homo sapiens (61)
Arabidopsis thaliana (4)
Mus musculus (1)

Repository

EGA (60)
biostudies-arrayexpress (5)
MetaboLights (2)
pride (1)

Tissue

Plant cell (1)

Technology Type

Mass spectrometry (2)
Affymetrix OncoScan FFPE Express (1)
Affinity purification coupled with mass spectrometry proteomics (1)
Data-dependent acquisition (1)
Mass Spectrometry (1)

Instrument Platform

Illumina HiSeq 2500 (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)

Publication Date

2011 (3)
2017 (1)
2015 (1)
2022 (1)
2018 (1)
2025 (1)

CHEBI ID

CHEBI:10043 (1)
CHEBI:10072 (1)
CHEBI:111517 (1)
CHEBI:114954 (1)
CHEBI:1159 (1)
CHEBI:116314 (1)
CHEBI:12936 (1)
CHEBI:131421 (1)
CHEBI:131739 (1)
CHEBI:131740 (1)
CHEBI:131778 (1)
CHEBI:131988 (1)
CHEBI:132366 (1)
CHEBI:132538 (1)
CHEBI:132547 (1)
CHEBI:132558 (1)
CHEBI:132820 (1)
CHEBI:132821 (1)
CHEBI:133564 (1)
CHEBI:133889 (1)
CHEBI:134253 (1)
CHEBI:134543 (1)
CHEBI:134761 (1)
CHEBI:136075 (1)
CHEBI:136553 (1)
CHEBI:136619 (1)
CHEBI:1368 (1)
CHEBI:138560 (1)
CHEBI:139424 (1)
CHEBI:139458 (1)

Metabolite Name

(-)-Epicatechin-3-(3''-O-methyl)gallate (1)
(9Z,11E)-Octadecadienoic acid (1)
1,2,3,6-Tetra-O-Galloyl-D-Glucose (1)
1,2,6-Tri-O-galloyl-glucose (1)
1,5-Anhydro-D-glucitol (1)
1-(sn-Glycero-3-phospho)-1D-myo-inositol (1)
1-Aminocyclopropane-1-carboxylic acid (1)
1-Decanol (1)
1-Eicosanol (1)
1-Linoleoylglycerol (1)
1-Methyladenine (1)
1-O-Feruloyl-D-Glucose (1)
1-O-Salicyl-D-glucose (1)
1-O-Vanilloyl-D-Glucose (1)
1-O-[(E)-Caffeoyl]-D-glucose (1)
1-Octadecanol (1)
1-Oleoyl-Sn-Glycerol (1)
1-alpha-Linolenoyl-glycerol (1)
10-Heptadecenoic Acid (1)
11-Octadecanoic acid (Vaccenic acid) (1)
12,13-DHOME ((9Z)-12,13-Dihydroxyoctadec-9-enoic acid) (1)
12,13-Epoxy-9-Octadecenoic Acid (1)
13(S)-HODE (13(S)-Hydroxyoctadeca-9Z,11E-dienoic acid) (1)
13-KODE ((9Z,11E)-13-Oxooctadeca-9,11-dienoic acid) (1)
13S-Hydroperoxy-9Z,11E-octadecadienoic acid (1)
13S-Hydroxy-9Z,11E,15Z-octadecatrienoic acid (1)
2'-Deoxyadenosine (1)
2'-Deoxyadenosine-5'-monophosphate (1)
2'-Deoxycytidine (1)
2'-Deoxyguanosine (1)

Study type

Transcription profiling by array (3)
ChIP-chip by tiling array (1)
RNA-seq of coding RNA (1)

Release Date

2020 (21)
2024 (13)
2025 (12)
2021 (12)
2023 (10)
2022 (8)
2015 (6)
2011 (6)
2018 (5)
2026 (4)
2014 (3)
2013 (3)
2017 (2)
2019 (2)
2016 (1)
2012 (1)
2010 (1)
2009 (1)
2007 (1)

Lab affiliation

Basic Immune System of Plants / Protein Mass SpectrometryMax Planck Institute for Plant Breeding Research Carl-von-Linne-Weg 10, 50829 Cologne, Germany (1)

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Expression profiling in silencing suppressor plants or in mirna mutants-Transcriptional and post-transcriptional changes in Arabidopsis plants that constitutively express suppressors of RNA silencing

gen107_ptgs - gene profiling in silencing suppressor plants or in mirna mutants - What are the genes that are differentially regulated in various tissues derived from silencing suppressor plants or miRNA mutants? - HcPro, P15, P19, CHS-RNAi (control), were grown on MS solid medium, and tissues were ...

ORGANISM(S): Arabidopsis thaliana

2011-08-22 | E-GEOD-26739 | biostudies-arrayexpress

TBPL2/TFIIA complex establishes the maternal transcriptome through oocyte-specific promoter usage.

Not available

S-EPMC7755920 | biostudies-literature

Designed coiled coils promote folding of a recombinant bacterial collagen.

Not available

S-EPMC3093825 | biostudies-literature

chip in silencing suppressor plants or in mirna plants-Transcriptional and post-transcriptional changes in Arabidopsis plants that constitutively express suppressors of RNA silencing

gen107_ptgs - chip in silencing suppressor plants or in mirna plants - What are the genes that are differentially regulated in various tissues derived from silencing suppressor plants or miRNA mutants? - How are the histone modifications and the chromatin structure in miRNA mutants or in silencing s...

ORGANISM(S): Arabidopsis thaliana

2011-08-22 | E-GEOD-24692 | biostudies-arrayexpress

RNA-seq of human intestinal organoids colonized with E. coli and other immature intestinal tissues

We performed RNA-seq to demonstrate that the epithelium of human pluripotent stem cell-derived human intestinal organoids is globally similar to the immature human epithelium and we utilize HIOs to investigate complex host-microbe interactions in this naive epithelium. RNA was isolated using the mir...

ORGANISM(S): Homo sapiens

2017-09-01 | E-MTAB-5801 | biostudies-arrayexpress

gene profiling in silencing suppressor plants or in mirna mutants-Transcriptional and post-transcriptional changes in Arabidopsis plants that constitutively express suppressors of RNA silencing

ORGANISM(S): Arabidopsis thaliana

2011-08-22 | E-GEOD-24693 | biostudies-arrayexpress

Direct injection of autologous mesenchymal stromal cells improves myocardial function.

Not available

S-EPMC2788037 | biostudies-literature

ImmunoglobuliN in the Treatment of Encephalitis (IgNiTE): protocol for a multicentre randomised controlled trial.

Not available

S-EPMC5129051 | biostudies-literature

Extracellular vesicles modulate integrin signaling and subcellular energetics to promote pulmonary lymphangioleiomyomatosis metastasis.