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UnknownPrediagnostic Plasma 25-Hydroxyvitamin D and Pancreatic Cancer Survival.
Not available
S-EPMC5012662 | biostudies-literature
MetabolomicsMetabolic Dynamics of In Vitro CD8+ T Cell Activation

CD8+ T cells detect and kill virally infected or cancerous cells. When activated from their naïve state, T cells undergo a complex transition, including major metabolic reprogramming. Detailed resolution of metabolic dynamics of a wide range of metabolites is needed to advance the field of immuno...

2021-06-02 | MTBLS2145 | MetaboLights
Transcriptomicscardiomyocyte induced from fibroblast
the fibroblast from the skin of the mouse dorsum become the cardiomyocyte do a lot of experiment and gradually find out the best combination of the induction
ORGANISM(S): Mus musculus 
2014-10-02 | E-GEOD-32605 | biostudies-arrayexpress
TranscriptomicsPlant root transcriptome profiling of Azospirillum-rice cooperation
Cooperation involving Plant Growth-Promoting Rhizobacteria results in improvements of plant growth and health. While pathogenic and symbiotic interactions are known to induce transcriptional changes for genes related to plant defense and development, little is known about the impact of phytostimulat...
ORGANISM(S): Oryza sativa Japonica Group 
2014-12-22 | E-GEOD-59137 | biostudies-arrayexpress
MetabolomicsAn untargeted metabolomics approach to characterize short-term and long-term metabolic changes after bariatric surgery
Bariatric surgery is currently one of the most effective treatments for obesity and leads to significant weight reduction, improved cardiovascular risk factors and overall survival in treated patients. To date, most studies focused on short-term effects of bariatric surgery on the metabolic profile ...
2015-09-15 | MTBLS218 | MetaboLights
TranscriptomicsRatios for G1 arrested cells (Printed array)
Chromatin plays roles in processes governed by different time scales. To assay the dynamic behaviour of chromatin in living cells, we used genomic tiling arrays to measure histone H3 turnover in G1-arrested S. cerevisiae at single-nucleosome resolution over 4% of the genome, and over the entire geno...
ORGANISM(S): Saccharomyces cerevisiae 
2010-06-11 | E-GEOD-6665 | biostudies-arrayexpress
TranscriptomicsDetermining single-cell mRNA expression profiles of a specific population isolated from zebrafish embryos at 10 hours post fertilization
Stable zebrafish cell lines were created that expressed GFP under the control of a previously characterized mouse Smarcd3 enhancer (10.7554/eLife.03848). Specifically, the 2.7 kb Mouse Smarcd3-F6 sequence (chr5: 24113559 -24116342 from mm9 assembly) was sub-cloned from a gateway entry vector into th...
ORGANISM(S): Danio rerio 
2018-08-20 | E-MTAB-6077 | biostudies-arrayexpress
TranscriptomicsSingle-cell transcriptome analysis of gata5GFP labelled WT and Gata5/6 deficient cells from early gastrulation to early somitogenesis in zebrafish
TgBAC(gata5:EGFP) transgenic line was used to isolate mesendoderm cells enriched for cardiac lineage. Wild type embryos at 6, 8, 10, 13 hours post fertilization (hpf) and morpholinos injected Gata5/6 know-down (KD) embryos at 13 hpf were pre-screened for GFP signal and dissociated into single-cell s...
ORGANISM(S): Danio rerio 
2021-12-01 | E-MTAB-9193 | biostudies-arrayexpress
TranscriptomicsDeep sequencing and proteomics analysis reveal globally dysregulated expression of microRNA and their target genes in rat kidneys treated by carcinogenic dose of Aristolochic Acid
MicroRNAs (miRNAs) play an important role in carcinogenesis by regulating the protein translation from their targeted messenger RNAs (mRNA). Aristolochic Acid (AA) is a potent carcinogen that can induce kidney tumors in both human and experimental animals. Although the expression and roles of miRN...
ORGANISM(S): Rattus norvegicus 
2012-01-01 | E-GEOD-33703 | biostudies-arrayexpress
TranscriptomicsDetermining open chromatin profiles of a specific population of cells isolated from zebrafish embryos at 10 hours post fertilization using the ATAC-seq method
Stable zebrafish cell lines were created that expressed GFP under the control of a previously characterized mouse Smarcd3 enhancer (10.7554/eLife.03848). Specifically, the 2.7 kb Mouse Smarcd3-F6 sequence (chr5: 24113559 -24116342 from mm9 assembly) was sub-cloned from a gateway entry vector into th...
ORGANISM(S): Danio rerio 
2018-08-21 | E-MTAB-6078 | biostudies-arrayexpress
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