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TranscriptomicsExpression data from breast cancer FNA biopsies from patients ( (USO samples)
Tumor samples were obtained from patients with stage II-III breast cancer before starting neoadjuvant chemotherapy with four cycles of 5-fluorouracil/epirubicin/cyclophosphamide (FEC) followed by four cycles of docetaxel/capecitabine (TX) on US Oncology clinical trial 02-103. Most patients with HER-...
ORGANISM(S): Homo sapiens 
2012-12-11 | E-GEOD-42822 | biostudies-arrayexpress
GenomicsGenome-wide characterization of cis-acting DNA targets of Opaque2 in maize
Opaque2 (O2) is a transcription factor that plays important roles during maize endosperm development. Mutation of the O2 gene improves the nutritional value of maize seeds, but also confers pleiotropic effects that result in reduced agronomic quality. To reveal the transcriptional regulatory framewo...
ORGANISM(S): Zea mays 
2015-03-06 | E-GEOD-63991 | biostudies-arrayexpress
UnknownGenomic characterisation and epidemiology of 2019 novel coronavirus: implications for virus origins and receptor binding.
Not available
S-EPMC7159086 | biostudies-literature
TranscriptomicsN-starvation and supplementation in weedy red rice
Background: Weedy rice (Oryza sativa L.) is a worldwide problem in rice production, being highly tolerant to sub-optimal nutrient levels hence competitive in nutrient acquisition. To understand the function of genes that are potentially involved in the high nutrient acquisition ability of weedy ric...
ORGANISM(S): Oryza sativa 
2014-07-16 | E-GEOD-59438 | biostudies-arrayexpress
TranscriptomicsExpression data from the Arabidopsis with freezing treatment following the inhibitors of DNA methylation and histone deacetylation
To understand the roles of DNA methylation and histone deacetylation in plant gene network that controls plant tolerance to freezing treatment, we used Affymetrix GeneChips ATH-121501 to analysis. For microarray analysis, Arabidopsis (ecotype Columbia) seedlings grew in four types of sterile growth ...
ORGANISM(S): Arabidopsis thaliana 
2015-01-20 | E-GEOD-63131 | biostudies-arrayexpress
TranscriptomicsLong non-coding RNAs and mRNAs expression analysis of HCC
Although many protein-coding genes have been identified to be aberrantly expressed in hepatocellular carcinoma (HCC), the mechanisms that account for development and progression of HCC remain unclear. In recent years, long noncoding RNAs (lncRNAs) have been shown to have critical regulatory roles in...
ORGANISM(S): Homo sapiens 
2011-09-04 | E-GEOD-27462 | biostudies-arrayexpress
UnknownFibroblast-Restricted Inflammasome Activation Promotes Atrial Fibrillation and Heart Failure With Diastolic Dysfunction.
Not available
S-EPMC12434206 | biostudies-literature
TranscriptomicsTranscriptome sequencing of human hepatocellular carcinoma
Deep high-throughput transcriptome sequencing (RNA-seq) performed on 3 pairs of matched tumor and adjacent non-tumorours (NT) tissues from HCC patients of Chinese origin generated 183.6-million reads that could be aligned. We discovered a number of differentially expressed genes and multiple types o...
ORGANISM(S): Homo sapiens 
2013-04-02 | E-GEOD-33294 | biostudies-arrayexpress
TranscriptomicsSystematic Transcriptome Analysis of Zebrafish Model of Diamond-Blackfan Anemia from RPS24 Deficiency (mRNA-Seq)
In this study, we found RPS24 is required for both the primitive hematopoiesis and definitive hematopoiesis process partly mediated by P53 pathway. With the RNA-seq and miRNA-seq technique, several deregulated genes and miRNAs were found to be related with hematopoiesis, vascular development and apo...
ORGANISM(S): Danio rerio 
2015-05-18 | E-GEOD-54152 | biostudies-arrayexpress
TranscriptomicsSystematic Transcriptome Analysis of Zebrafish Model of Diamond-Blackfan Anemia from RPS24 Deficiency (miRNA-Seq)
In this study, we found RPS24 is required for both the primitive hematopoiesis and definitive hematopoiesis process partly mediated by P53 pathway. With the RNA-seq and miRNA-seq technique, several deregulated genes and miRNAs were found to be related with hematopoiesis, vascular development and apo...
ORGANISM(S): Danio rerio 
2015-05-18 | E-GEOD-54259 | biostudies-arrayexpress
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