Yuan-Yuan Yang Y

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Unknown (5979)
Proteomics (207)
Transcriptomics (58)
Metabolomics (25)
Genomics (16)
Other (1)

Organisms

Homo sapiens (142)
Mus musculus (68)
Rattus norvegicus (7)
Danio rerio (6)
Drosophila melanogaster (5)
Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 (3)
Zea mays (3)
Sus scrofa domesticus (3)
Mycobacterium tuberculosis (2)
Severe acute respiratory syndrome coronavirus 2 (2)
Staphylococcus aureus (2)
Yersinia pestis CO92 (2)
Acromyrmex echinatior (1)
Deinococcus gobiensis (1)
Streptomyces griseus (1)
Tetrahymena thermophila (1)
Streptomyces coelicolor A3(2) (1)
Streptomyces coelicolor (1)
Oryza sativa (1)
502593 (1)
Arabidopsis thaliana (1)
Bubalus bubalis (1)
Capsella rubella (1)
Diaphorina citri (1)
Escherichia coli (1)
Gallus gallus (1)
Lamprigera yunnana (1)
Macaca fascicularis fascicularis (1)
Magnaporthe (1)
Plasmodium yoelii yoelii 17XNL (1)

Repository

iProX (104)
pride (84)
biostudies-arrayexpress (61)
MetaboLights (25)
EGA (13)
PeptideAtlas (13)
MassIVE (5)
GPMDB (1)
jPOST (1)

Tissue

Cell culture (21)
Plasma Non-glyco (11)
Brain (10)
Epithelial cell (9)
Permanent cell line cell (5)
Embryonic stem cell (3)
Heart (3)
Kidney (3)
Liver (3)
Macrophage (3)
Male Reproductive System (2)
Blood cell (2)
Blood plasma (2)
CNS neuron (sensu Vertebrata) (2)
Cell suspension culture (2)
Colon (2)
Embryo (2)
HEK-293T cell (2)
Lung (2)
Malignant cell (2)
Testis (2)
Adrenal gland (1)
Bladder cell (1)
Blood serum (1)
Bone marrow (1)
Cerebellum (1)
Culture fluid (1)
Electrically active cell (1)
Eye (1)
HeLa cell (1)

Disease

Alzheimer's disease (3)
Disease free (3)
Prostate adenocarcinoma (3)
Autism spectrum disorder (2)
Breast cancer (2)
Influenza (2)
Not Available (1)
Acute leukemia (1)
Carcinoma (1)
Cardiovascular system disease (1)
Colon cancer (1)
Lung carcinoma (1)
Nephrolithiasis (1)
Neuroblastoma (1)
Osteoporosis (1)
Pancreatic carcinoma (1)
Pancreatic ductal adenocarcinoma (1)
Primary immunodeficiency disease (1)
Severe acute respiratory syndrome (1)
Urinary bladder cancer (1)

Technology Type

Mass Spectrometry (84)
Shotgun proteomics (38)
Mass spectrometry (24)
Bottom-up proteomics (19)
Data-dependent acquisition (7)
Data-independent acquisition (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Gel-based experiment (5)
Proteogenomics (3)
Top-down proteomics (3)
DiaPASEF (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000, Affymetrix SNP 6.0 (1)
Mass spectrometry assay (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

LTQ Orbitrap Velos (15)
Liquid Chromatography MS - negative - reverse phase (8)
Liquid Chromatography MS - positive - reverse phase (8)
Q Exactive (2)
Liquid Chromatography MS - (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Xevo TQ MS (Waters) (2)
Instrument (1)
LTQ Orbitrap (1)
Q Exactive Plus (1)
6530 Q-TOF LC/MS (Agilent) (1)
Agilent 5975E GC/MSD (Agilent) (1)
Agilent 7890 (1)
Exactive (Thermo Scientific) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Xevo QTof MS (Waters) (1)

Publication Date

2022 (36)
2024 (34)
2025 (33)
2023 (32)
2026 (26)
2013 (24)
2015 (20)
2021 (19)
2020 (12)
2019 (12)
2018 (9)
2014 (8)
2012 (8)
2010 (5)
2016 (3)
2011 (3)
2009 (3)
2017 (3)
2008 (2)
2007 (1)

UNIPROT ID/AC

A0A024RC46 (13)
A5A3E0 (13)
A6NNZ2 (13)
B3KML9 (13)
B4DHB3 (13)
B4DL86 (13)
B4DRV9 (13)
B4DY08 (13)
B4E3A4 (13)
C9JM50 (13)
E7EX29 (13)
G8JLB6 (13)
H0YM50 (13)
H7BZ94 (13)
I3L4N8 (13)
J3KPS3 (13)
J3QRK5 (13)
M0QZ52 (13)
O00299 (13)
O14556 (13)
O14818 (13)
O60812 (13)
O75369 (13)
O75369-8 (13)
O75694 (13)
O76013 (13)
O76015 (13)
O95678 (13)
P00338 (13)
P00338-3 (13)

ENSEMBL ID

ENSG00000170477 (13)
ENSG00000147251 (5)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000247315 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:15354 (12)
CHEBI:16704 (12)
CHEBI:17368 (12)
CHEBI:17154 (11)
CHEBI:30769 (11)
CHEBI:16737 (10)
CHEBI:16919 (10)
CHEBI:17568 (10)
CHEBI:17596 (10)
CHEBI:28044 (10)
CHEBI:15428 (9)
CHEBI:16040 (9)
CHEBI:16196 (9)
CHEBI:16335 (9)
CHEBI:16708 (9)
CHEBI:17351 (9)
CHEBI:17361 (9)
CHEBI:17405 (9)
CHEBI:17562 (9)
CHEBI:17748 (9)
CHEBI:17750 (9)
CHEBI:18186 (9)
CHEBI:18257 (9)
CHEBI:25094 (9)
CHEBI:27897 (9)
CHEBI:28300 (9)
CHEBI:7916 (9)
CHEBI:15741 (8)
CHEBI:15756 (8)
CHEBI:15891 (8)

Metabolite Name

Creatinine (8)
Glycine (6)
Hypoxanthine (6)
Leucine (6)
4-Pyridoxic acid (5)
ADP (5)
ATP (5)
Adenine (5)
Adenosine (5)
Adenosine (5)
CMP (5)
Choline (5)
Creatine (5)
FAD (5)
GDP (5)
Glutamine (5)
Glycerophosphocholine (5)
Kynurenic acid (5)
Kynurenine (5)
Maleic acid (5)
Methionine sulfoxide (5)
NAD+ (5)
Nicotinamide (5)
Pyridoxamine (5)
Taurodeoxycholic acid (5)
UMP (5)
Uracil (5)
Uridine (5)
Valine (5)
Xanthurenic acid (5)

Modification

15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (39)
RNA-seq of coding RNA (10)
Other (6)
ChIP-seq (2)
RNA-seq of non coding RNA (2)
Comparative genomic hybridization by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (1071)
2024 (855)
2022 (816)
2023 (775)
2021 (625)
2020 (459)
2019 (292)
2018 (230)
2017 (203)
2016 (152)
2026 (149)
2015 (123)
2014 (89)
2013 (75)
2012 (53)
2011 (28)
2010 (17)
2009 (9)
2008 (4)
2007 (4)
2006 (4)
2005 (4)
2004 (2)
2002 (1)

Lab affiliation

Sun Yat-sen University (4)
BGI Research (3)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048 (3)
Department of Biochemistry and Structural Biology and Center for Innovative Drug Discovery School of Medicine, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229, United States (2)
Institute of Genetics & Developmental Biology, Chinese Academy of Sciences (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
Shanghai Jiao Tong University Affiliated Sixth People's Hospital (2)
St Jude Children's Research Hospital (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
1 Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. 2 Center of Clinical Oncology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, China. 3 State Key Laboratory Jiangsu Center for the Collaboration and Innovation of Cancer Biotherapy, Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. (1)
1 Department of Hepatobiliary & Pancreatic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, 430071, PR China. 2 Clinical Medicine Research Center for Minimally Invasive Procedure of Hepatobiliary & Pancreatic Diseases of Hubei Province, Hubei, PR China. 3 Taikang Center for Life and Medical Sciences of Wuhan University (1)
1.Department of Pharmaceutics, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China 2.State Key Laboratory of Natural and Biomimetic Drugs, Beijing 100191, China 3.Beijing Key Laboratory of Molecular Pharmaceutics and New Drug Delivery Systems, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China (1)
1.Department of Pharmaceutics, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China 2.State Key Laboratory of Natural and Biomimetic Drugs, Beijing 100191, China Beijing Key Laboratory of Molecular Pharmaceutics and New Drug Delivery Systems, School of Pharmaceutical Sciences, Peking University, Beijing 100191, China (1)
1Department of Hepatobiliary & Pancreatic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, 430071, PR China. 2Clinical Medicine Research Center for Minimally Invasive Procedure of Hepatobiliary & Pancreatic Diseases of Hubei Province, Hubei, PR China. 3Taikang Center for Life and Medical Sciences of Wuhan University (1)
Anonymity for double-blind review (1)
BGI-Shenzhen (1)
Center for Cultivation of Subtropical Forest Resources (CCSFR), Zhejiang A & F University, Linan, Hangzhou, 311300, People's Republic of China. (1)
Center for Proteomics & Metabolomics, St. Jude Children's Research Hospital, Memphis, TN 38105, USA (1)
Centre for Membrane Interactions and Dynamics, Department of Biomedical Science, University of Sheffield, Sheffield (1)
Department of Archaeology, Max Planck Institute for the Science of Human History, Jena, Germany. (1)
Department of Biochemistry and Biophysics, University of Pennsylvania School of Medicine (1)
Department of Biology, Brain Research Center, Southern University of Science and Technology (1)
Department of Clinical Laboratory, National Center for Respiratory Medicine, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou Institute of Respiratory Health, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong 510120, China. (1)
Department of Medical Biotechnology and Laboratory Science College of Medicine, Chang Gung University, Taoyuan, Taiwan (1)
Department of Nephrology, the First Affiliated Hospital of Zhengzhou University, Zhengzhou, Henan, China (1)
Department of Obstetrics/Gynecology, Joint Laboratory of Reproductive Medicine (SCU-CUHK), Key Laboratory of Obstetric, Gynecologic and Pediatric Diseases and Birth Defects of Ministry of Education, West China Second University Hospital, Sichuan University, Chengdu 610041, China. (1)
Department of Ophthalmology, the Second Affiliated Hospital of Army Medical University (1)
Department of pathophysiology, School of Basic Medical Sciences, Wuhan University, Wuhan 430071, China (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Genecology Research Centre, University of the Sunshine Coast, Maroochydore DC, QLD 4558, Australia (1)

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Gene expression analysis in control and HIF-2 alpha deficient murine lung endothelial cells under hypoxia

Journal : Blood. 2009 Jul 9;114(2):469-77. Epub 2009 May 13. Title : Endothelial deletion of hypoxia-inducible factor-2alpha (HIF-2alpha) alters vascular function and tumor angiogenesis. Authors : Skuli N, Liu L, Runge A, Wang T, Yuan L, Patel S, Iruela-Arispe L, Simon MC, Keith B. Abstract : Hyp...

ORGANISM(S): Mus musculus

2009-07-15 | E-GEOD-16067 | biostudies-arrayexpress

Differential role of sphingomyelin in influenza virus, rhinovirus and SARS-CoV-2 infection of Calu-3 cells

Host cell lipids play a pivotal role in the pathogenesis of respiratory virus infection. However, a direct comparison of the lipidomic profile of influenza virus and rhinovirus infections is lacking. In this study, we first compared the lipid profile of influenza virus and rhinovirus infection in a ...

2022-11-15 | MTBLS2352 | MetaboLights

An untargeted metabolomics approach to characterize short-term and long-term metabolic changes after bariatric surgery

Bariatric surgery is currently one of the most effective treatments for obesity and leads to significant weight reduction, improved cardiovascular risk factors and overall survival in treated patients. To date, most studies focused on short-term effects of bariatric surgery on the metabolic profile ...

2015-09-15 | MTBLS218 | MetaboLights

Genome-wide distribution of AdpA, a global regulator for secondary metabolism and morphological differentiation in Streptomyces, revealed the extent and complexity of the AdpA regulatory network.

This SuperSeries is composed of the following subset Series: GSE33992: Streptomyces griseus transcriptome analysis in solid culture with delta adpA, encoding a global transcriptional regulator involved in morphological differentiation and secondary metabolism GSE33993: Streptomyces griseus transcrip...

ORGANISM(S): Streptomyces griseus

2012-04-03 | E-GEOD-33994 | biostudies-arrayexpress

Quercetin Nanocrystal Gel: A Novel Topical Therapeutic Strategy for Androgenetic Alopecia.

Not available

S-EPMC12473781 | biostudies-literature

Recording Intrinsic Nerve Activity at the Sinoatrial Node in Normal Dogs With High-Density Mapping.

Not available

S-EPMC7887084 | biostudies-literature

Multiple biochemical indices and metabolomics of Clonorchis sinensis provide a novel interpretation of biomarkers

BACKGROUND: Clonorchiasis, an infectious disease caused by the liver fluke Clonorchis sinensis, may lead to the development of liver and gallbladder diseases, and even cholangiocarcinoma (CCA). However, the pathogenesis, host-pathogen interaction, and diagnostic markers ...

2022-06-24 | MTBLS3306 | MetaboLights

LGR4 modulates breast cancer initiation, metastasis, and cancer stem cells.

Not available

S-EPMC5901378 | biostudies-literature

GmSAUR46b Integrates Light Signals to Regulate Leaf Midrib Thickness and Stem Trichome Density in Soybean.

Not available

S-EPMC12471168 | biostudies-literature

Molecular Mechanism of Aflatoxin B1 Synthesis Related AfVerB Regulating the Development, AFB1 Biosyntheis and Virulence of Aspergillus flavus Mainly Through Its CYP Domain.

Not available

S-EPMC12028525 | biostudies-literature