Yue V V - OmicsDI

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Unknown (381)
Proteomics (85)
Transcriptomics (53)
Genomics (48)
Metabolomics (37)
Models (3)

Organisms

Homo sapiens (108)
Mus musculus (32)
Rattus norvegicus (3)
Rattus (2)
Caenorhabditis elegans (2)
Escherichia coli (2)
Oryza sativa (2)
Arthrostemma ciliatum (1)
Larimichthys crocea (1)
Macaca fascicularis (1)
Zea mays (1)
Ovis aries (1)
Sus scrofa (1)
Drosophila melanogaster (1)
Danio rerio (1)
Arabidopsis thaliana (1)
Oryctolagus cuniculus (1)
Plenodomus lindquistii (1)
Vibrio parahaemolyticus RIMD 2210633 (1)
Bos taurus (1)
Acipenser baerii x Acipenser schrenckii (1)
Apostasia shenzhenica (1)
Arachis hypogaea (1)
Brachypodium distachyon (1)
Cicer arietinum (1)
Dunaliella salina (1)
Francisella tularensis subsp. tularensis (1)
Glycine max (1)
Lathyrus oleraceus (1)
Lens culinaris (1)

Repository

pride (70)
biostudies-arrayexpress (63)
EGA (37)
MetaboLights (37)
iProX (5)
MassIVE (5)
BioModels (3)
jPOST (3)
PAXDB (2)
NODE (1)

Tissue

Cell culture (36)
Epithelial cell (4)
Plant cell (4)
Blood plasma (3)
Lung (3)
Embryonic stem cell (2)
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Root (2)
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Blood serum (1)
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Brain (1)
Cerebrospinal fluid (1)
Colon (1)
Culture condition:beech wood-grown cell (1)
Epithelial cell of lung (1)
Epithelial cell of skin gland (1)
Flower (1)
Germ cell (1)
HeLa cell (1)
Kidney (1)
Leaf (1)
Liver (1)
Mammary gland (1)
Melanocyte (1)
Permanent cell line cell (1)
Primary cell (1)

Disease

Colon cancer (2)
Lung adenocarcinoma (2)
Breast cancer (1)
Cardiovascular system disease (1)
Cervix carcinoma (1)
Disease free (1)
Lung cancer (1)
Melanoma (1)
Melanomatosis (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (70)
Shotgun proteomics (52)
Mass spectrometry (28)
Mass spectrometry assay (9)
Bottom-up proteomics (6)
Top-down proteomics (5)
Data-independent acquisition (4)
Affinity purification coupled with mass spectrometry proteomics (2)
Data-dependent acquisition (2)
HDMSE (1)
Mass spectrometry imaging (1)
Proteogenomics (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (18)
Liquid Chromatography MS - positive - reverse phase (17)
Illumina HiSeq 2500 (3)
6540 Q-TOF LC/MS (Agilent) (3)
Liquid Chromatography MS - positive - hilic (3)
Illumina NovaSeq 6000 (2)
Liquid Chromatography MS - - reverse phase (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Illumina NovaSeq X (1)
HiSeq X Ten (1)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2000 (1)
LTQ Orbitrap Elite (1)
LTQ Orbitrap Velos (1)
Orbitrap Astral (1)
Orbitrap Exploris 480 (1)
Orbitrap Fusion Lumos (1)
Q Exactive (1)
Q Exactive HF-X (1)
5975C Series GC/MSD (Agilent) (1)
Agilent GC/MS, LECO GC/TOFMS (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - alternating - reverse-phase (1)
Liquid Chromatography MS - alternating – hilic (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - positive (1)

Publication Date

2021 (39)
2025 (18)
2026 (14)
2014 (14)
2022 (14)
2023 (13)
2013 (13)
2015 (11)
2016 (9)
2012 (9)
2024 (6)
2020 (6)
2010 (5)
2019 (4)
2017 (4)
2011 (3)
2008 (2)
2018 (2)

UNIPROT ID/AC

1FEH1_WHEAT (2)
4565.Traes_1AL_3CF82DD08.2 (2)
4565.Traes_1AL_3FDB6FDB4.1 (2)
4565.Traes_1AL_44FB362A9.2 (2)
4565.Traes_1AL_4E621A250.2 (2)
4565.Traes_1AL_51D597B92.1 (2)
4565.Traes_1AL_52E56C8D3.1 (2)
4565.Traes_1AL_53F3380AF.1 (2)
4565.Traes_1AL_5E2C30B46.1 (2)
4565.Traes_1AL_6B64D0E80.1 (2)
4565.Traes_1AL_72202D9DF.1 (2)
4565.Traes_1AL_738358449.1 (2)
4565.Traes_1AL_78CB13657.2 (2)
4565.Traes_1AL_7B509569F.1 (2)
4565.Traes_1AL_7CF571E9F.1 (2)
4565.Traes_1AL_7D6DC73FC.2 (2)
4565.Traes_1AL_9C2D7A0A6.1 (2)
4565.Traes_1AL_9EFC68149.1 (2)
4565.Traes_1AL_A47D32D30.1 (2)
4565.Traes_1AL_A69755144.1 (2)
4565.Traes_1AL_B15921488.1 (2)
4565.Traes_1AL_BAAF4391C.1 (2)
4565.Traes_1AL_BAB3D977B.1 (2)
4565.Traes_1AL_D06A380E9.2 (2)
4565.Traes_1AL_D39C4F23A.2 (2)
4565.Traes_1AL_D789B5634.1 (2)
4565.Traes_1AL_D8B97BD8D.1 (2)
4565.Traes_1AL_D8FE82B94.1 (2)
4565.Traes_1AL_E07235CF1.1 (2)
4565.Traes_1AL_EEB8BBB6B.1 (2)

CHEBI ID

CHEBI:16335 (8)
CHEBI:16750 (8)
CHEBI:18257 (7)
CHEBI:16196 (6)
CHEBI:16235 (6)
CHEBI:16708 (6)
CHEBI:16755 (6)
CHEBI:16865 (6)
CHEBI:17154 (6)
CHEBI:17509 (6)
CHEBI:17568 (6)
CHEBI:17596 (6)
CHEBI:17964 (6)
CHEBI:7916 (6)
CHEBI:15682 (5)
CHEBI:15741 (5)
CHEBI:15756 (5)
CHEBI:15891 (5)
CHEBI:16027 (5)
CHEBI:16040 (5)
CHEBI:16325 (5)
CHEBI:16414 (5)
CHEBI:16525 (5)
CHEBI:16566 (5)
CHEBI:16704 (5)
CHEBI:16857 (5)
CHEBI:16870 (5)
CHEBI:16919 (5)
CHEBI:17015 (5)
CHEBI:29108 (1)

Metabolite Name

Uracil (9)
Hypoxanthine (8)
Adenine (7)
Adenosine (7)
Creatine (7)
Dodecanoic acid (7)
Guanosine (7)
Inosine (7)
L-Proline (7)
Lumichrome (7)
Ornithine (7)
Palmitic acid (7)
Spermidine (7)
Taurine (7)
Creatinine (6)
Cytosine (6)
Guanine (6)
L-Isoleucine (6)
L-Methionine (6)
Oleic acid (6)
Piperidine (6)
Riboflavin (6)
Thymine (6)
Uridine (6)
5-Hydroxylysine (5)
Choline (5)
Deoxycholic acid (5)
Dihydrouracil (5)
Glycerophosphocholine (5)
Glycocholic acid (5)

IsPrivate

False (3)

Modelling Approach

Ordinary differential equation model (2)
Constraint-based model (1)

Study type

Transcription profiling by array (21)
RNA-seq of coding RNA (15)
Comparative genomic hybridization by array (7)
Methylation profiling by high throughput sequencing (6)
ChIP-seq (5)
Unknown experiment type (2)
Animal - High-throughput sequencing (2)
Other (2)
MicroRNA profiling by array (1)
RNA-seq of coding RNA from single cells (1)
RNA-seq of non coding RNA (1)

Release Date

2020 (49)
2025 (48)
2022 (41)
2024 (38)
2023 (37)
2021 (36)
2019 (29)
2014 (21)
2018 (20)
2015 (18)
2026 (17)
2013 (17)
2017 (17)
2012 (14)
2016 (13)
2011 (9)
2010 (8)
2008 (3)
2009 (3)
2007 (3)
2006 (1)
2005 (1)
1976 (1)

Lab affiliation

Department of Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02215, USA., Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (26)
Key Laboratory of Rare and Uncommon Diseases, Department of Microbiology, Institute of Basic Medicine, Shandong First Medical University & Shandong Academy of Medical Sciences (2)
Beijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing University of Chemical Technology (1)
Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA 02115, USA (1)
Center for Alzheimer's and Related Dementias (CARD), NIA and NINDS, NIH, Bethesda, Maryland, USA. (1)
College of Life Science, Capital Normal University, Beijing 100048, China (1)
College of Pharmacy and Pharmaceutical Sciences, Washington State University, Spokane, WA 99202, USA (1)
Current affiliation: Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, PA (1)
Dalian Ocean University, China. 116023 (1)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, 201203, China (1)
Department of Biochemistry and Molecular Biology, College of Basic Medicine, Key Laboratory of Medical Biotechnology of Hebei Province, Hebei Medical University, Shijiazhuang, China (1)
Department of Cardiology, Chengdu Third People’s Hospital/Affiliated Hospital of Southwest Jiaotong University, Chengdu, China. (1)
Department of Medicine, Biochemistry and Molecular Genetics, Northwestern University Feinberg School of Medicine, Chicago, IL 60611, USA (1)
Department of Pathogen Biology, School of Clinical and Basic Medical Sciences, Shandong First Medical University & Shandong Academy of Medical Sciences (1)
Department of Pharmaceutical Sciences, School of Pharmacy, University of Maryland, Baltimore (1)
Department of Rehabilitation Medicine, The Second Affiliated Hospital, School of Medicine, South China University of Technology, Guangzhou 510180, China (1)
Genetics Branch, Center for Cancer Research, National Cancer Institute, Bethesda, MD 20892, USA (1)
HeFei University of Technology (1)
Huazhong Agricultural University (1)
Hunan Provincial Key Laboratory of Forestry Biotechnology, Central South University of Forestry and Technology, Changsha, 410004, Hunan, P.R. China (1)
Institute of Dairy Science, College of Animal Sciences, Zhejiang University, Hangzhou 310058, China; (1)
Institute of Horticulture, Zhejiang Academy of Agricultural Sciences (1)
Institute of Marine Sciences and Guangdong Provincial Key Laboratory of Marine Biotechnology, Shantou University, Shantou 515063, China (1)
Key Laboratory of Cellular Function and Pharmacology of Jilin Province, Yanbian University, (1)
Key Laboratory of Freshwater Biodiversity Conservation, Ministry of Agriculture of China, Yangtze River Fisheries Research Institute, Chinese Academy of Fishery Sciences, Wuhan 430223, China (1)
Lanzhou University (1)
MichiganStateUniversity (1)
Nankai University (1)
National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, 430070 Wuhan, China (1)
Northwest University (1)

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Brain metabolomic profiling of eastern honey bee (Apis cerana) infested with the mite Varroa destructor

The mite Varroa destructor is currently the greatest threat to apiculture as it is causing a global decrease in honey bee colonies. However, it rarely causes serious damage to its native hosts, the eastern honey bees Apis cerana. To better understand the mechanism of resistance of A. cerana against ...

2017-10-27 | MTBLS379 | MetaboLights

Polycarcin V induces DNA-damage response and enables the profiling of DNA-binding proteins.

Not available

S-EPMC9798893 | biostudies-literature

Molecular endpoints of Ca2+/calmodulin- and voltage-dependent inactivation of Ca(v)1.3 channels.

Not available

S-EPMC2828906 | biostudies-literature

V-ATPase subunit B plays essential roles in the molting process of the Chinese mitten crab, Eriocheir sinensis.

Not available

S-EPMC7272352 | biostudies-literature

DPHL v2: An updated and comprehensive DIA pan-human assay library for quantifying more than 14,000 proteins

we generated DPHL v2 from 1608 DDA-MS data acquired using Orbitrap mass spectrometers. The data included 586 DDA-MS newly acquired from 17 tissue types, while 1022 files were derived from DPHL v1. DPHL v2 thus comprises data from 24 sample types, including several cancer types . We generated four va...

ORGANISM(S): Homo Sapiens

2023-01-18 | PXD039313 |

Proton Nuclear Magnetic Resonance-Spectroscopic Discrimination of Wines Reflects Genetic Homology of Several Different Grape (V. vinifera L.) Cultivars.

Not available

S-EPMC4684234 | biostudies-literature

Efficient Aerobic Oxidation of Ethyl Lactate to Ethyl Pyruvate over V₂O₅/g-C₃N₄ Catalysts.

Not available

S-EPMC7346237 | biostudies-literature

Comparative global B cell receptor repertoire difference induced by SARS-CoV-2 infection or vaccination via single-cell V(D)J sequencing.

Not available

S-EPMC9377262 | biostudies-literature

Allosteric regulators selectively prevent Ca²⁺-feedback of Ca_V and Na_V channels.

Not available

S-EPMC6156082 | biostudies-literature

Deletion of vp0057 impacts the proteome profile in Vibrio parahaemolyticus

Using bioinformatics analysis, we found that VP0057 may be a potential Ser/Thr protein kinase with phosphorylation activity. Thus, we constructed the vp0057-deletion mutant (∆vp0057) from the wild-type V. parahaemolyticus serotype O3:K6 and employed a mass spectrometry-based proteomic strategy to ch...

ORGANISM(S): Vibrio Parahaemolyticus Rimd 2210633

2020-09-30 | PXD021775 |

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607 Results

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