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MetabolomicsNon-targeted in vitro metabolomics for proteome-scale identification of novel enzymes in Escherichia coli
Many yet undiscovered enzymes still limit our understanding of metabolism. Here, we develop a high-throughput mass spectrometry approach to comprehensively profile proteome-scale protein collections for in vitro enzymatic activity. Overexpressed or purified proteins are incubated in a supplemented m...
2016-01-11 | MTBLS373 | MetaboLights
TranscriptomicsTranscriptional characterization of maize roots in response to urea and nitrate
Although urea is the most used nitrogen fertilizer worldwide, little is known on the capacity of crop plants to use urea per se as a nitrogen source for development and growth. To date, the molecular and physiological bases of its transport have been investigated only in a limited number of species....
ORGANISM(S): Zea mays 
2015-03-02 | E-GEOD-53102 | biostudies-arrayexpress
TranscriptomicsRoot transcriptional profile of tomato Fe-deficient plants in response to supply with natural chelating agents.
Tomato, a Strategy I model plant for Fe deficiency, is an important economical crop. The transcriptional responses induced by Fe deficiency in tomato roots were previously described (Zamboni et al., 2012). The changes in trascriptome caused by the supply of Fe to plants starved fro 1 week were descr...
ORGANISM(S): Solanum lycopersicum 
2016-01-11 | E-GEOD-69419 | biostudies-arrayexpress
TranscriptomicsTranscriptional characterization of tomato roots response to iron deficiency
Iron (Fe) deficiency is a yield-limiting factor for a variety of field crops across the world and generally results from the interaction of limited soil Fe bioavailability and susceptible genotype cultivation. Tomato, a Strategy I, model plant for Fe deficiency, is an important economical crop. Toma...
ORGANISM(S): Solanum lycopersicum 
2012-03-22 | E-GEOD-31112 | biostudies-arrayexpress
MetabolomicsGNPS Metabolomics analysis of 180 cancer cell lines
Metabolome analysis of 180 cancer cell lines. Intracellular extracts. Flow injection analysis - TOF (negative mode, no LC). Sample description is included in Metadata_File_CellLines.txt
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2021-04-04 | MSV000087155 | GNPS
ModelsGebauer2016 - Genome-scale model of Caenorhabditis elegans metabolism (without bacteria)
Gebauer2016 - Genome-scale model of Caenorhabditis elegans metabolism (without bacteria) This model is one of the two versions of ElegCyc presented in the paper. It describes the metabolism of a worm raised in a medium without bacteria. This model is described in the article: A Genome-Sca...
2017-04-20 | MODEL1704200000 | BioModels
ModelsGebauer2016 - Genome-scale model of Caenorhabditis elegans metabolism (with bacteria)
Gebauer2016 - Genome-scale model of Caenorhabditis elegans metabolism (with bacteria) This model is one of the two versions of ElegCyc presented in the paper. It describes the metabolism of a worm raised in a medium with bacteria This model is described in the article: A Genome-Scale Data...
2017-04-20 | MODEL1704200001 | BioModels
ProteomicsFlow-injection analysis of Saccharomyces cerevisiae mutant AYT1
The intracellular metabolome of S. cerevisiae mutants in the gene AYT1 were measured under glucose growth conditions, as well as growth on oleate.
ORGANISM(S): Saccharomyces Cerevisiae (ncbitaxon:4932) 
2021-01-27 | MSV000086772 | MassIVE
TranscriptomicsHif1-alpha dependent splice factor expression and alternative splicing in neonatal mouse cardiomyocytes (NMC)
Neonatal mouse cardiomyocytes (NMC) were cultured in normoxia (21% O2) or hypoxia (3% O2) with and without a lentiviral shRNA-mediated knockdown of Hif1-alpha. Total RNA was extracted from NMC using RNeasy kit, cDNA was synthesized using GeneChip WT cDNA Synthesis and Amplification kit (Affymetrix 9...
ORGANISM(S): Mus musculus 
2015-06-02 | E-MTAB-2652 | biostudies-arrayexpress
UnknownVegan diet in young children remodels metabolism and challenges the statuses of essential nutrients
Not available
S-SCDT-EMM-2020-13492P | biostudies-other
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