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UnknownIntegration of anatomy ontology data with protein-protein interaction networks improves the candidate gene prediction accuracy for anatomical entities.
Not available
S-EPMC7542696 | biostudies-literature
UnknownProtein-protein interaction network module changes associated with the vertebrate fin-to-limb transition.
Not available
S-EPMC10730527 | biostudies-literature
TranscriptomicsExosomes isolated from M.tb infected cells modulate macrophage response to IFN-gamma
we studied the role of exosomes isolated from M.tb infected macrophages in modulating the macrophage response to IFN-γ. Nimblegen microarray gene expression studies were used to compare the suppression of IFN-γ inducible genes by exosomes relative to the virulent strain of M.tuberculosis. Overall ou...
ORGANISM(S): Mus musculus 
2011-06-05 | E-GEOD-29731 | biostudies-arrayexpress
TranscriptomicsC1q elicited macrophage gene expression
We have data from a previous microarray experiment which shows that C1q elicits macrophages to express genes important for clearance of dead (apoptotic) cells. In this experiment we want to determine the signaling mechanism by which C1q is turning on macrophage gene expression. For our control (sam...
ORGANISM(S): Mus musculus 
2014-07-10 | E-GEOD-48619 | biostudies-arrayexpress
TranscriptomicsRelated insects show differing amounts of population differentiation and localization of transcribed genes in response to climate (Erynnis propertius)
We used custom Nimblegen microarrays representing whole-larval transcriptomes for two species (Erynnis propertius [this submission] and Papilio zelicaon [submitted seperately]) to assess gene expression differences affecting tolerance to climatic regimes. Many individuals were sourced from populatio...
ORGANISM(S): Erynnis propertius 
2014-05-05 | E-GEOD-56404 | biostudies-arrayexpress
TranscriptomicsRelated insects show differing amounts of population differentiation and localization of transcribed genes in response to climate (Papilio zelicaon)
We used custom Nimblegen microarrays representing whole-larval transcriptomes for two species (Papilio zelicaon [this submission] and Erynnis propertius [submitted seperately]) to assess gene expression differences affecting tolerance to climatic regimes. Many individuals were sourced from populatio...
ORGANISM(S): Papilio zelicaon 
2014-05-05 | E-GEOD-56403 | biostudies-arrayexpress
TranscriptomicsGene expression profiling during diapause induction in Culex pipiens mosquitoes
Investigation of gene expression level differences in Culex pipiens (SB) and C. quinquefasciatus (JHB) at three time points (8, 16, and 24 hours post-exposure) during the early pupal state in standard (25°C; 16 h light/8 h dark) and diapause-inducing (18°C; 8 h light/16 h dark) conditions. A forty...
ORGANISM(S): Culex pipiens 
2014-09-30 | E-GEOD-56722 | biostudies-arrayexpress
TranscriptomicsDifferential gene transcript expression profiles among human monocyte-derived dendritic cells infected with Leishmania major Friedlin V1 strain and Leishmania donovani 1S strain parasites at early infection time points
Monocyte derived dendritic cells (MDDC) were infected with Leishmania major or Leishmania donovani parasites and collected at 4, 8, and 24 hours post-infection to analyze the differential effects those parasite species have on human host cell gene expression over time. Monocyte derived dendritic cel...
ORGANISM(S): Homo sapiens 
2015-01-02 | E-GEOD-64610 | biostudies-arrayexpress
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