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TranscriptomicsHuman AoSMCs stimulated by viable P. gingivalis
Porphyromonas gingivalis is a gram-negative bacterium that causes destructive chronic periodontitis. In addition, this bacterium is also involved in the development of cardiovascular disease. The aim of this study was to investigate the effects of P. gingivalis infection on gene and protein expressi...
ORGANISM(S): Homo sapiens 
2013-11-17 | E-MTAB-1922 | biostudies-arrayexpress
TranscriptomicsRNA-seq for ES2, SUM159 or A549 cells treated with GSK-615
GSK-615 was used to treat ES2, SUM159, and A549 cells, and RNA-seq was used to look at how the compound changed gene expression in general. We aimed to predict probable TFs activated with GSK-615 treatment by focusing on the overlapping differentially expressed genes across the three cell lines impa...
ORGANISM(S): Homo sapiens 
2025-01-31 | E-MTAB-14701 | biostudies-arrayexpress
TranscriptomicsHuman aortic smooth muscle cells infected with different strains of Porphyromonas gingivalis
Human primary aortic smooth muscle cells were infected with wild type (W50, 381), W50 derived gingipain mutants (E8 and K1A), or 381 derived fimbriae mutants (DPG3 and KRX178) strains of Porphyromonas gingivalis for 24 hours. The RNA was extracted from the cells and human whole genome microarray wer...
ORGANISM(S): Homo sapiens 
2015-11-06 | E-MTAB-3955 | biostudies-arrayexpress
ProteomicsIsolation of lysosomal fractions from ES2 cancer cells
Pro-metastatic proteins are notably stabilized in cancer cells to promote future development, and tumors frequently repeat programs to gain invasive and dispersion capabilities. It is uncertain if unsuccessful protein degradation has an impact on cancer's metastatic programs. It is still mostly uncl...
ORGANISM(S): Homo sapiens (Human) 
2025-02-04 | PXD058467 | Pride
Lysosome lamp2a 
Genomicsena-DATASET-BIOPIC-06-06-2018-15:24:14:117-163 - samples
bulk RNA-seq data of the 5 HCC patinets. Single cell RNA seq data of these patients was under the accession number EGAD00001003337
EGAD00001004148 | EGA
Genomicsena-DATASET-BIOPIC-06-06-2018-15:55:49:835-165 - samples
bulk Exome-seq data of the 5 HCC patinets. Single cell RNA seq data of these patients was under the accession number EGAD00001003337
EGAD00001004149 | EGA
Genomicsena-DATASET-BIOPIC-16-05-2017-14:34:15:534-498 - samples
T cells isolated from peripheral blood, tumors and adjacent normal tissues from six hepatocellular carcinoma patients. SmartSeq2 and Tang2009 protocol were used to amplify RNA from single T cells. High depth enables simultaneously expression profiling and TCR assembling.
EGAD00001003337 | EGA
GenomicsSingle-cell RNA sequencing on 5063 single T cells isolated from peripheral blood, tumour and adjacent normal tissues from six hepatocellular carcinoma patients.
Single-cell RNA sequencing on 5063 single T cells isolated from peripheral blood, tumour and adjacent normal tissues from six hepatocellular carcinoma patients. The transcriptional properties of these individual cells, coupled with the assembled T cell receptor (TCR) sequences, were used to delineat...
EGAS00001002072 | EGA
GenomicsPeking University BIOPIC Data Access Committee (PUBDAC).The DATA ACCESS AGREEMENT is provided at https://github.com/zhangyybio/single-T-cell-data-access. Applicants can request access to the data by directly downloading it or by sending an email to cancerpku@pku.edu.cn. The process that is used to approve an application includes verifying the institution, participants and research purposes of the application. In general this process will take about two weeks. In principal, any academic research
Data Access Committee EGAC00001000551
EGAC00001000551 | EGA
UnknownFGF4 ameliorates the liver inflammation by reducing M1 macrophage polarization in experimental autoimmune hepatitis.
Not available
S-EPMC11295337 | biostudies-literature
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