Zhang Chun C - OmicsDI

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Unknown (130)
Transcriptomics (36)
Proteomics (28)
Metabolomics (11)
Genomics (3)

Organisms

Homo sapiens (25)
Mus musculus (17)
Chlamydomonas reinhardtii (8)
Pseudomonas canadensis (8)
Marchantia polymorpha subsp. ruderalis (8)
Methylocystis sp. (8)
Exiguobacterium sp. SH31 (8)
Porites pukoensis (8)
Bothrops insularis (8)
Bothrops jararaca (8)
Bothrops jararacussu (8)
Bothrops cotiara (8)
Dinosauria (8)
Streptomyces coelicolor (8)
Pseudomonas taiwanensis (8)
Burkholderia ubonensis MSMB22 (8)
Pseudomonas aeruginosa PA103 (8)
Oryza sativa Indica Group (3)
Drosophila melanogaster (2)
Panonychus citri (1)
Citrus sinensis (1)
Populus trichocarpa (1)
Rattus norvegicus (1)
Escherichia coli K-12 (1)
uncultivated soil bacterium (1)
Streptomyces (1)
Bombyx mori (1)
Penaeus vannamei (1)
Oryza sativa (1)
Saccharomyces cerevisiae (1)

Repository

biostudies-arrayexpress (38)
iProX (18)
MetaboLights (9)
pride (8)
GNPS (2)
MassIVE (2)
EGA (1)

Tissue

Optic nerve (2)
Retina (2)
Cell culture (2)
Renal cortical epithelial cell (1)
HeLa cell (1)
Permanent cell line cell (1)
Epithelial cell (1)

Disease

Wounds and Injuries (1)

Technology Type

Mass spectrometry (9)
Mass Spectrometry (8)
Chemical cross-linking coupled with mass spectrometry proteomics (3)
Shotgun proteomics (3)
ILLUMINA, Illumina HiSeq 2500 (1)
SRM/MRM (1)
Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (2)
Q Exactive HF (2)
TOF Pegasus HT (LECO) (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - positive - reverse phase (2)
Liquid Chromatography MS - negative - reverse phase (2)
MicrOTOF-Q II (1)
Q Exactive (1)
LTQ Orbitrap Velos (1)
Xevo TQ MS (Waters) (1)
TripleTOF 5600 (AB Sciex) (1)
Xevo G2 QTOF (Waters) (1)

Publication Date

2016 (7)
2014 (7)
2021 (7)
2013 (5)
2011 (5)
2012 (4)
2017 (4)
2023 (3)
2015 (3)
2010 (3)
2009 (3)
2020 (3)
2024 (3)
2018 (3)
2026 (3)
2022 (2)
2025 (2)
2019 (1)

CHEBI ID

CHEBI:17964 (3)
CHEBI:30769 (3)
CHEBI:189208 (2)
CHEBI:189401 (2)
CHEBI:75568 (2)
CHEBI:4573 (2)
CHEBI:16380 (2)
CHEBI:27616 (2)
CHEBI:132121 (2)
CHEBI:15702 (2)
CHEBI:10022 (2)
CHEBI:39246 (2)
CHEBI:50885 (2)
CHEBI:17266 (2)
CHEBI:168762 (2)
CHEBI:28527 (2)
CHEBI:36219 (2)
CHEBI:32425 (2)
CHEBI:72959 (2)
CHEBI:30778 (2)
CHEBI:42504 (2)
CHEBI:30200 (2)
CHEBI:28499 (2)
CHEBI:24266 (2)
CHEBI:17626 (2)
CHEBI:3908 (2)
CHEBI:72998 (2)
CHEBI:47925 (2)
CHEBI:36090 (2)
CHEBI:30816 (2)

Metabolite Name

PC(38:5) (2)
Vanillic acid (2)
Pentadecanoic acid (2)
Coumestrol (2)
Pantothenic acid (2)
Methionine (2)
Citric acid (2)
Stearic acid (2)
Pipecolic acid (2)
Adenosine (2)
Spermidine (2)
Guanine (2)
Palmitic acid (2)
Adenine (2)
Cytidine (2)
Thymidine (2)
Inosine (2)
(+)-(s)-carvone (1)
6-[(3e,5e,7s)-5,7-dimethyl-2-oxo-3,5-nonadien-1-yl]-2,4-dihydroxy-3-methylbenzaldehyde (1)
(3ar,4s,6r,11ar)-6,9-dihydroxy-6,10-dimethyl-3-methylene-2,7-dioxo-2,3,3a,4,5,6,7,8,9,11a-decahydrocyclodeca[b]furan-4-yl methacrylate (1)
Dipropyl adipate (1)
Isochlorogenic acid c (1)
Al 8810 methyl ester (1)
(8e)-11,13-dihydroxy-4-methyl-4,5,6,7-tetrahydro-2h-3-benzoxacyclododecine-2,10(1h)-dione (1)
(+)-ar-turmerone (1)
Isorhamnetin-3-o-nehesperidine (1)
Glycerol tributyrate (1)
(+)-catechin (hydrate) (1)
R-1 methanandamide phosphate (1)
(1r,9r)-5-cyclohexyl-11-(propylsulfonyl)-7,11-diazatricyclo[7.3.1.02,7]trideca-2,4-dien-6-one (1)

Study type

Transcription profiling by array (22)
RNA-seq of coding RNA (8)
RNA-seq of non coding RNA (3)
ChIP-seq (2)
Methylation profiling by array (2)
Comparative genomic hybridization by array (1)

Release Date

2021 (19)
2016 (14)
2024 (14)
2025 (13)
2022 (13)
2019 (13)
2014 (11)
2020 (11)
2018 (10)
2023 (9)
2013 (9)
2012 (9)
2011 (8)
2015 (4)
2009 (4)
2010 (3)
2017 (3)
2026 (1)

Lab affiliation

Department of Ophthalmology, Beijing Key Laboratory of Restoration of Damaged Ocular Nerve, Peking University Third Hospital, Beijing, China (2)
Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China. (2)
Department of Nephrology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430022, China. (1)
Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing, China (1)
Shandong Technology Innovation Center of Molecular Targeting and Intelligent Diagnosis and Treatment, Binzhou Medical University, Yantai, China. (1)
Assistant Professor of Biochemistry, Biophysics and Structural Biology Molecular and Cell Biology Department University of California at Berkeley Li Ka Shing Center, room 300A Berkeley, CA 94720 rzoncu@berkeley.edu (1)

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Transcription profiling of human embryonic stem cells and neuroepithelial cells

Comparing gene expressing profile of human embryonic stem cells and neuroepithelial cells differentiated from human embryonic stem cells.

ORGANISM(S): Homo sapiens

2009-11-08 | E-MEXP-2426 | biostudies-arrayexpress

Identification of latent tuberculosis infection-related microRNAs in human U937 macrophages expressing Mycobacterium tuberculosis Hsp16.3

Latent tuberculosis infection (LTBI) relies on a homeostasis of macrophages and Mycobacterium tuberculosis (Mtb). The small heat shock protein, Mtb Hsp16.3 (also known as latency-associated antigen), plays an important role in Mtb persistence within macrophages. However, the mechanism of LTBI remain...

ORGANISM(S): Homo sapiens

2014-03-17 | E-GEOD-54630 | biostudies-arrayexpress

Structure and ligand recognition of class C GPCRs.

Not available

S-EPMC4077135 | biostudies-literature

Gene expression of human isogenic trisomy 21 induced pluripotent stem cells and derived neurons

Down syndrome (trisomy 21) is the most common genetic cause of intellectual disability, but the precise molecular mechanisms underlying impaired cognition remain unclear. Elucidation of these mechanisms has been hindered by the lack of a model system that contains full trisomy of chromosome 21 (Ts21...

ORGANISM(S): Homo sapiens

2013-07-09 | E-GEOD-48611 | biostudies-arrayexpress

Transcription profiling by array of human neuroectoderm or embryonic stem cells after Pax6 knockdown

Stable Pax6 and Luciferase knockdown human embryonic stem cell lines (H9) were made through lentiviral infection. Two different Pax6 RNAi lines and two Luciferase RNAi lines were then differentiated to neuroectoderm cells for 6 days. mRNA pooled from these two individual lines were then subjected to...

ORGANISM(S): Homo sapiens

2010-07-01 | E-MEXP-2668 | biostudies-arrayexpress

Metabotropic GABA signalling modulates longevity in C. elegans.

Not available

S-EPMC4667614 | biostudies-literature

Remote ischemic conditioning combined with intravenous thrombolysis for acute ischemic stroke.

Not available

S-EPMC7318096 | biostudies-literature

A novel compound heterozygous variant of the SLC12A3 gene in Gitelman syndrome pedigree.

Not available

S-EPMC5789536 | biostudies-literature

Loss of TP53 cooperates with c-MET overexpression to drive hepatocarcinogenesis.