Zhang Du D - OmicsDI

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Unknown (4134)
Proteomics (78)
Transcriptomics (60)
Metabolomics (26)
Genomics (22)
Multiomics (3)

Organisms

Homo sapiens (51)
Mus musculus (22)
Zea mays (3)
Gallus gallus (3)
Macaca mulatta (2)
Oryza sativa (2)
Ovis aries (2)
Sus scrofa (2)
Drosophila melanogaster (2)
Arabidopsis thaliana (2)
Macaca fascicularis fascicularis (2)
Yersinia pestis CO92 (2)
(Populus alba x Populus glandulosa) x Populus tomentosa (1)
Rhodococcus opacus (1)
Oryza rufipogon (1)
Brassica oleracea (1)
Capra hircus (1)
Pan troglodytes (1)
Schizosaccharomyces pombe (1)
Glycine max (1)
Oryza sativa Japonica Group (1)
Triticum aestivum (1)
Rattus norvegicus (1)
Bacillus altitudinis (1)
Elaphe taeniura (1)
Gryllinae (1)
Hierodula patellifera (1)
Locusta migratoria (1)
Mus sp. (1)
Periplaneta americana (1)

Organisms

Mus musculus (1)

Repository

biostudies-arrayexpress (65)
pride (43)
iProX (29)
MetaboLights (24)
EGA (16)
MassIVE (6)
GNPS (2)
ENA (1)

Tissue

Cell culture (11)
Heart (6)
Lung (5)
Epithelial cell (4)
Brain (3)
Liver (3)
Mesenchymal cell (3)
Whole body (3)
Hepatocyte (2)
Kidney (2)
Leaf (2)
Permanent cell line cell (2)
Adductor (1)
Anterior chamber of the eye (1)
Blood cell (1)
Blood plasma (1)
Blood serum (1)
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Seed (1)
Small intestine (1)
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Testis (1)
Urine (1)

Disease

Cardiovascular system disease (4)
Breast cancer (2)
Cryptococcal meningitis (1)
Hepatocellular carcinoma (1)
Influenza (1)
Mastitis (1)
Myopia (1)

Technology Type

Mass Spectrometry (43)
Mass spectrometry (21)
Shotgun proteomics (20)
Bottom-up proteomics (7)
Affinity purification coupled with mass spectrometry proteomics (5)
Gel-based experiment (5)
Data-dependent acquisition (4)
Data-independent acquisition (3)
Mass spectrometry assay (2)
Top-down proteomics (2)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
DiaPASEF (1)
HDMSE (1)
Mass spectrometry imaging (1)
SRM/MRM (1)
SWATH MS (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (12)
Liquid Chromatography MS - positive - reverse phase (9)
Liquid Chromatography MS - positive - hilic (6)
Liquid Chromatography MS - negative - hilic (4)
MS:1000031 (3)
Gas Chromatography MS - (3)
Q Exactive HF (2)
TripleTOF 6600 (2)
Liquid Chromatography MS - - reverse phase (2)
BGIseq500 (1)
BGISEQ-500 (1)
Synapt G2 MS (1)
Liquid Chromatography MS - alternating – hilic (1)
Bruker (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)

Publication Date

2024 (20)
2023 (19)
2015 (17)
2021 (16)
2022 (15)
2025 (13)
2020 (12)
2016 (11)
2014 (8)
2013 (8)
2012 (7)
2011 (5)
2009 (5)
2010 (3)
2026 (3)
2017 (2)
2019 (2)
2008 (1)
2005 (1)
2018 (1)

CHEBI ID

CHEBI:16708 (10)
CHEBI:25094 (9)
CHEBI:17154 (9)
CHEBI:16196 (9)
CHEBI:17568 (9)
CHEBI:15891 (9)
CHEBI:16704 (9)
CHEBI:16737 (9)
CHEBI:16919 (9)
CHEBI:15354 (9)
CHEBI:15756 (9)
CHEBI:17368 (9)
CHEBI:28044 (8)
CHEBI:116314 (8)
CHEBI:16335 (8)
CHEBI:34900 (8)
CHEBI:27897 (8)
CHEBI:30769 (8)
CHEBI:16040 (7)
CHEBI:16811 (7)
CHEBI:18295 (7)
CHEBI:28867 (7)
CHEBI:16750 (7)
CHEBI:16870 (7)
CHEBI:17748 (7)
CHEBI:17821 (7)
CHEBI:16393 (7)
CHEBI:27266 (7)
CHEBI:17509 (7)
CHEBI:7916 (7)

Metabolite Name

Creatinine (7)
Creatine (7)
Hypoxanthine (7)
Spermine (6)
Adenine (6)
L-Tyrosine (6)
Inosine (6)
Linoleamide (5)
Uracil (5)
Valine (5)
Propionylcarnitine (5)
Pantothenic acid (5)
L-Histidine (5)
Nicotinamide (5)
Taurine (5)
4-Hydroxybenzaldehyde (5)
Glycocholic acid (5)
Oleamide (5)
Adenosine (5)
Guanine (5)
Oleic acid (5)
Azelaic acid (5)
L-Phenylalanine (5)
3-Methoxytyramine (4)
(R)-3-Hydroxybutyric acid (4)
Pelargonic acid (4)
N-Acetylvaline (4)
Butylparaben (4)
Thymine (4)
Myristoleic acid (4)

First Public Date

2018 (1)

Modification

6-dioxaoctanediamine derivatized cysteine (1)

Study type

Transcription profiling by array (29)
RNA-seq of coding RNA (22)
ChIP-seq (3)
Other (2)
Methylation profiling by array (2)
Methylation profiling by high throughput sequencing (2)
RNA-seq of non coding RNA (2)
Transcription profiling by SAGE (1)
Genotyping by array (1)
Comparative genomic hybridization by array (1)

Release Date

2025 (692)
2022 (610)
2023 (511)
2024 (510)
2021 (407)
2020 (341)
2019 (229)
2018 (168)
2017 (132)
2016 (125)
2015 (124)
2026 (88)
2014 (83)
2013 (52)
2012 (36)
2011 (28)
2009 (24)
2010 (11)
2008 (11)
2005 (6)
2006 (5)
2007 (2)
2004 (1)
2003 (1)
2002 (1)
1999 (1)

Lab affiliation

University of Alabama at Birmingham, O'Neal Mass Spectrometry Proteomics Shared Facility (4)
XiangYa hospital of Central south university (3)
Binzhou Medical University (1)
Central Laboratory, Dongguan Binhaiwan Hospital, Guangdong Province, China (1)
College of Life and Health Sciences, Northeastern University, Liaoning, Shenyang, China (1)
College of Veterinary Medicine, Northwest A&F University, Yangling, Shaanxi 712100, P.R. China (1)
Department of Biochemistry and Molecular Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, Hubei 430032, China (1)
Department of Biochemistry, and Department of Cardiology of Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310058, China. (1)
Department of Cardiology, Shanghai East Hospital, Tongji University School of Medicine, No. 150 Jimo Road, Shanghai 200120, China. (1)
Department of Clinical Laboratory Medicine, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (1)
Department of Epidemiology, College of Public Health, Zhengzhou University (1)
Department of Molecular and Medical Pharmacology, University of California, Los Angeles, CA 90095, USA (1)
Department of Ophthalmology, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 200080, China. (1)
Department of Vascular Dysfunction, European Center for Angioscience, Medical Faculty Mannheim, Heidelberg University, Ludolf-Krehl-Straße 7-11, 68167 Mannheim, Germany. Department of Vascular Dysfunction, European Center for Angioscience, Medical Faculty Mannheim, Heidelberg University, Ludolf-Krehl-Straße 7-11, 68167 Mannheim, Germany. (1)
Dezhou Vegetable Engineering Research Center,Shandong,China (1)
Fujian Agriculture and Forestry University-BFPC (1)
Huazhong University of Science and Technology (1)
Institute of Biology Leiden, Leiden University (1)
Institute of Biology, Leiden University, Sylviusweg 72, 2333 BE Leiden, The Netherlands (1)
Laboratory of Human Genetics of Infectious Diseases, Necker Branch, INSERM U1163, Necker Hospital for Sick Children, Paris, France; University of Paris, Imagine Institute, Paris, France; St. Giles Laboratory of Human Genetics of Infectious Diseases, Rockefeller Branch, The Rockefeller University, New York, NY, USA; Department of Pediatrics, Necker Hospital for Sick Children, AP-HP, Paris, France; Howard Hughes Medical Institute, New York, NY, USA (1)
Nanjing University Medical School (1)
Ningbo University (1)
Northwest Agriculture and Forestry University, Yangling District, Xianyang City, Shaanxi Province, China (1)
School of Clinical Medicine, Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region, China, 750004. Ningxia Human Stem Cell Institute, General Hospital of Ningxia Medical University, Yinchuan, Ningxia Hui Autonomous Region, China, 750004. (1)
School of Medicine, Shanghai University, Shanghai 200444, China. (1)
Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai, China. (1)
Shanghai Institute for Materia Medica (1)
Shenyang Agricultural University (1)
Southern University of Science and Technology (1)
St. Jude Children's Research Hospital (1)

Tags

xref:PubMed:23747202 (1)
xref:PubMed:30457566 (1)
xref:PubMed:32055844 (1)
xref:PubMed:34412677 (1)
xref:PubMed:31903125 (1)

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Supplementation of Bacillus sp. DU-106 reduces hypercholesterolemia and ameliorates gut dysbiosis in high-fat diet rats

Gut microbiota modulation by a probiotic is a novel therapy for hypercholesterolemia mitigation. This study initially investigated the potential hypocholesterolemic effect of Bacillus sp. DU-106 in hypercholesterolemic rats and explored its potential relation with gut microbiota. Sprague-Dawley r...

2021-04-08 | MTBLS1168 | MetaboLights

Effect of probiotic Lactobacillus casei Zhang on liver gene expression of hypercholesterolemic rats

The hypocholesterolemic effect of probiotics has been observed, but the molecular mechanism of probiotic-host interaction is still obscure. In this study, DNA microarray technology was used to explore the gene expression profile of liver of hypercholesterolemic rats caused by administration of probi...

ORGANISM(S): Rattus norvegicus

2011-12-31 | E-GEOD-23740 | biostudies-arrayexpress

A Highly Sensitive and Unbiased Approach for Elucidating Antibody Repertoires

Developing B lymphocytes undergo V(D)J recombination to assemble germline V, D, and J gene segments into exons that encode the antigen-binding variable region of immunoglobulin (Ig) heavy (H) and light (L) chains. IgH and IgL chains associate to form the B cell receptor (BCR), which upon antigen bi...

ORGANISM(S): Mus musculus

2016-07-22 | E-GEOD-82126 | biostudies-arrayexpress

High-resolution mapping of genotype-phenotype relationships in cri du chat syndrome using array comparative genomic hybridization.

Not available

S-EPMC1196376 | biostudies-literature

Metabolic engineering of Streptomyces peucetius for biosynthesis of N,N-dimethylated anthracyclines

Daunorubicin and doxorubicin, two anthracycline polyketides produced by Streptomyces peucetius, are potent anticancer agents that are widely used in chemotherapy, despite severe side effects. Recent advances have highlighted the potential of producing improved derivatives with reduced side effects b...

ORGANISM(S): Streptomyces peucetius subsp. caesius

2024-01-18 | PXD048604 | Pride