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ProteomicsLeaf-age specific flood resilience in Arabidopsis thaliana is determined by distinct processes contributing to post-submergence recovery
While the molecular mechanisms mediating submergence tolerance have been extensively studied, those underpinning age-dependent resilience remain poorly characterized. In Arabidopsis thaliana, submergence elicits a leaf-age dependent phenotype in which senescence and death progress across an age grad...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2026-08-14 | PXD067068 | Pride
Arabidopsis thaliana leaf proteome post submergence recovery tmtpro 
ProteomicsEthylene treated Arabidopsis roots
Flooded plants experience impaired gas diffusion underwater, leading to oxygen deprivation (hypoxia) stress. The volatile plant hormone ethylene is rapidly trapped in submerged plant cells and is instrumental for enhanced metabolic hypoxia acclimation. However, the precise mechanisms underpinning et...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2022-12-19 | PXD031138 | Pride
Arabidopsis root ethylene tmt10 
ProteomicsQuantitative N-terminome of N-end rule mutant in Arabidopsis
According to the /N-end rule pathway, proteins with basic N-termini are targeted for degradation by the Arabidopsis thaliana E3 ligase, PROTEOLYSIS6 (PRT6). Here, we undertook a quantitative proteomics study of N-end rule mutant prt6, to investigate the impact of this pathway on the etiolated seedli...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2017-10-27 | PXD006450 | Pride
N-terminome Arabidopsis N-end rule mutant etiolated seedlings tmt- labelling tails 
ProteomicsQuantitative proteome analysis of the Arabidopsis thaliana N-degron pathway E3 ligase mutant, prt1-1.
The N-degron pathway relates the half-life of a protein to its amino terminal (Nt) residue. Following cleavage of proteins by endopeptidases, new N-t amino acids are revealed and can be recognised by different E3 ligase enzymes that target the substrate proteins for degradation via the proteasome. S...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2020-01-09 | PXD014238 | Pride
Arabidopsis N-degron pathway prt1 leaves tmt- labelling 
ProteomicsUnderstanding the impact of multigene engineering on the proteome: omega-3 Camelina as a case study
Camelina sativa (hereafter Camelina) has emerged as a promising platform for metabolic engineering due to its short lifecycle, high seed oil content, and amenability to transformation. Previous work has demonstrated the successful introduction of non‑native pathways for the synthesis of very long ch...
ORGANISM(S): Camelina sativa (False flax) (Myagrum sativum) 
2026-08-14 | PXD074106 | Pride
Camelina dha1 epa8 dia 
ProteomicsUnderstanding the impact of multigene engineering on the proteome: omega-3 Camelina as a case study
Camelina sativa (hereafter Camelina) has emerged as a promising platform for metabolic engineering due to its short lifecycle, high seed oil content, and amenability to transformation. Previous work has demonstrated the successful introduction of non‑native pathways for the synthesis of very long ch...
ORGANISM(S): Camelina sativa (False flax) (Myagrum sativum) 
2026-08-14 | PXD074097 | Pride
Camelina dha1 epa8 tmtpro rts 
ProteomicsQuantitative Phosphoproteomics after auxin-stimulated lateral root induction
Protein phosphorylation is instrumental to early signaling events. Studying system-wide phosphorylation in relation to processes under investigation requires a quantitative proteomics approach. In Arabidopsis, auxin application can induce pericycle cell divisions and lateral root formation. Initiati...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2014-02-25 | PXD000177 | Pride
Arabidopsis root Auxin Phosphorylation 
OtherQuantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots.
Data from ProteomeXchange, PXD ID: PXD001719. Experiment: TAILS_freeNt, file: TAILS_B_freeNt.msf.mgf. Published as part of Proteomics. 2015 Feb 27 . From the Abstract: {{i}} According to the Arg/N-end rule pathway, proteins with basic N-termini are targeted for degradation by the Arabidopsis thalia...
ORGANISM(S): Ath1 
GPM32320014396 | GPMDB
Resource Reanalysis 
ProteomicsQuantitative proteomics analysis of the Arg/N-end rule pathway of targeted degradation in Arabidopsis roots
According to the Arg/N-end rule pathway, proteins with basic N-termini are targeted for degradation by the Arabidopsis thaliana E3 ligase, PROTEOLYSIS6 (PRT6). Proteins can also become PRT6 substrates following post-translational arginylation by arginyltransferases ATE1 and 2. Here, we undertook a q...
ORGANISM(S): Arabidopsis thaliana (Mouse-ear cress) 
2015-03-26 | PXD001719 | Pride
Tmt N-end rule Root Tails Quantitative proteomics 
TranscriptomicsMutant K-ras promotes carcinogen-induced murine colorectal tumourigenesis, but does not alter tumour chromosome stability
K-ras mutations are observed in around 40% human colorectal adenomas and carcinomas and contribute to the pathogenesis of human and rodent colorectal tumour formation. Previously, we developed and characterised a strain of transgenic mice with inducible intestinal epithelial expression of K-rasVal12...
ORGANISM(S): Mus musculus 
2010-10-02 | E-GEOD-24010 | biostudies-arrayexpress
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