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ProteomicsGlobal landscape of protein phosphorylation during plant regeneration initiation in cotton (Gossypium hirsutum L.)
Phosphorylation is one of the most common post-translational modifications and is central to many cellular signaling events; however, little is currently known about the phosphorylation landscape during somatic embryogenesis (SE) for plant regeneration. Here, we systematically analyzed the phosphopr...
ORGANISM(S): Gossypium hirsutum 
2025-03-18 | PXD061812 | Pride
Cotton (gossypium hirsutum l.)  phosphoproteomics  embryogenic differentiation  plant regeneration initiation 
TranscriptomicsA global analysis of QTLs for expression variations in rice shoot at early seedling stage
Analyses of QTLs for expression levels (eQTLs) of the genes reveal genetic relationship between expression variation and the regulator, thus unlocking the information for identifying the regulatory network. Oligo-nucleotide expression microarrays hybridized with RNA can simultaneously provide data f...
ORGANISM(S): Oryza sativa Indica Group 
2011-06-24 | E-GEOD-22564 | biostudies-arrayexpress
MetabolomicsMetabolomic analysis of alfalfa (Medicago sativa L.) root-symbiotic rhizobia responses under alkali stress
Alkaline salts (e.g., NaHCO3 and Na2CO3) causes more severe morphological and physiological damage to plants than neutral salts (e.g., NaCl and Na2SO4) due to differences in pH. The mechanism by which plants respond to alkali stress is not fully understood, especially in plants having symbotic relat...
2018-07-27 | MTBLS481 | MetaboLights
TranscriptomicsA global analysis of QTLs for expression variations in rice flag leaf at heading date
Analyses of QTLs for expression levels (eQTLs) of the genes reveal genetic relationship between expression variation and the regulator, thus unlocking the information for identifying the regulatory network. In this study, we used Affymetrix GeneChip Rice Genome Array to analyze eQTLs in rice flag le...
ORGANISM(S): Oryza sativa 
2014-02-05 | E-GEOD-49020 | biostudies-arrayexpress
ProteomicsThe key clock component ZEITLUPE negatively regulates ABA signalling by degradation of the chloroplast outer membrane-localized CHLH/ABAR in Arabidopsis
Firstly, we immunoprecipitated the ZTL protein in ZTL-overexpressing plants (with a YFP tag at the C-terminus of ZTL). Then, the total proteins were identified by MS.
ORGANISM(S): Arabidopsis Thaliana 
2021-10-13 | PXD029110 |
ProteomicsHAT1-meidated phosphoproteomics liver tissues
Phosphoproteomics in liver tissues of WT and Hat1-/-mice
ORGANISM(S): Mus Musculus 
2023-07-10 | PXD043633 |
ProteomicsA collection of transcriptomic and proteomic datasets from sesame in response to salt stress
The proteome profiles in the shoots of two sesame genotypes with contrasting salinity tolerance were investigated under saline condition using an iTRAQ-based quantitative proteomics approach.
ORGANISM(S): Sesamum Indicum 
2019-03-08 | PXD013013 |
ProteomicsQuantitative Proteomic Atlas of Ubiquitination in Hepatocellular Carcinoma
Ubiquitination plays a critical role in human hepatocellular carcinoma (HCC) genesis and metastasis, but how these processes affect systemic ubiquitinome still remains unclear. In this study, our dataset of around 12,000 diGly modified sites was identified providing a valuable insight into HCC. We f...
ORGANISM(S): Homo Sapiens 
2020-04-14 | PXD011895 |
ProteomicsQuantitative proteomic data of hepatocellular carcinoma
Ubiquitination plays a critical role in human cancer genesis and metastasis, but how the systemic ubiquitinome changes during these processes remains unclear. In this study, our dataset of approximately 12,000 identified ubiquitinated sites provided valuable insight into human hepatocellular carcino...
ORGANISM(S): Homo Sapiens 
2020-04-16 | PXD018593 |
ProteomicsTMT proteomics analysis of cerebrospinal fluid from patients with cerebral venous sinus thrombosis
In the present study, we detected the alterations of the CSF protein spectrum of CVST patients by TMT technique, screen differentially expressed proteins, analyze the functions of these signals through bioinformatics methods, and finally validate the key molecules through parallel reaction monitorin...
ORGANISM(S): Homo Sapiens 
2022-11-22 | PXD038259 |
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