Zhang Jie J - OmicsDI

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Unknown (329)
Proteomics (183)
Transcriptomics (34)
Genomics (27)
Metabolomics (19)
Multiomics (3)

Organisms

Homo sapiens (121)
Mus musculus (34)
Arabidopsis thaliana (8)
Saccharomyces cerevisiae (7)
Drosophila melanogaster (5)
Haemaphysalis longicornis (4)
Tachysurus vachellii (3)
Oryza sativa (2)
Canis lupus familiaris (2)
Rattus norvegicus (2)
Tachysurus fulvidraco x Tachysurus vachelli (2)
Tachysurus fulvidraco (2)
Mus sp. (2)
Sus scrofa (2)
Escherichia coli (2)
Oryza sativa Indica Group (1)
Bartonella henselae str. Houston-1 (1)
Rhipicephalus haemaphysaloides (1)
Adeno-Associated Virus PREDICT_AaV-6 (1)
Bacillus siamensis (1)
Pseudomonas ogarae (1)
Bufo gargarizans (1)
502593 (1)
Lamprigera yunnana (1)
Cucurbita ficifolia (1)
Pseudomonas syringae pv. tomato str. DC3000 (1)
Mycoplasmoides pneumoniae M129 (1)
Citrus reticulata (1)
Capsella rubella (1)
Medicago sativa (1)

Repository

iProX (150)
biostudies-arrayexpress (40)
pride (25)
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Tissue

Cell culture (7)
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Muscle (2)
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Disease

Prostate adenocarcinoma (3)
SS2-infected (1)
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Disease free (1)
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Technology Type

Mass Spectrometry (25)
Mass spectrometry (17)
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Affinity purification coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (5)
Liquid Chromatography MS - positive - reverse phase (5)
Liquid Chromatography MS - positive - hilic (3)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - alternating - hilic (2)
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Computater Servers UPPMAX-SNIC. (1)
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NanoDrop spectrophotometer (NanoDrop Technologies, Wilmington, DE) (1)
Dynamic light scattering and zeta potential. The experiments were performed on a Malvern Zetasizer NanoZS instrument using a He-Ne laser (Max, 5 mW) at 633 nm. (1)
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Illumina HiSeq 2500 (1)
Illumina NovaSeq 6000 (1)
NextSeq 500 (1)
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Liquid Chromatography MS - Positive (LC-MS (Pos)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
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Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - positive (1)
Xevo QTof MS (Waters) (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - (1)
Gas Chromatography MS - positive (1)
Liquid Chromatography MS - negative - hilic (1)
QExactive (1)

Publication Date

2022 (25)
2024 (24)
2020 (21)
2025 (18)
2023 (14)
2021 (10)
2013 (10)
2012 (8)
2026 (8)
2014 (7)
2017 (6)
2015 (6)
2011 (4)
2019 (4)
2010 (3)
2018 (3)
2016 (1)
2009 (1)
2008 (1)
2004 (1)

UNIPROT ID/AC

Q6ZVE7 (3)
Q99619 (3)
Q9UBZ4 (3)
Q8N4U5 (3)
Q96QP1 (3)
Q6ZTQ3 (3)
Q9Y576 (3)
Q9NXZ2 (3)
Q9H633 (3)
Q96PC5-2 (3)
Q96PC5 (3)
Q8TDW5 (3)
Q8IZP6 (3)
Q6MZQ0 (3)
Q9C019 (3)
Q96EP1 (3)
Q8IYM2 (3)
Q86SJ2 (3)
Q02833 (3)
O43194 (3)
Q9UHA2 (3)
Q9Y2V0 (3)
Q9UKT8 (3)
Q9NWF9 (3)
Q9H668 (3)
Q9H3J6 (3)
Q9H116 (3)
Q9BPX7 (3)
Q8IUR5 (3)
Q86XH1 (3)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000247315 (3)
ENSG00000170477 (3)

CHEBI ID

CHEBI:16335 (8)
CHEBI:48131 (7)
CHEBI:16704 (7)
CHEBI:16919 (7)
CHEBI:37024 (7)
CHEBI:30769 (7)
CHEBI:35581 (6)
CHEBI:30763 (6)
CHEBI:15956 (6)
CHEBI:17012 (6)
CHEBI:16359 (6)
CHEBI:28790 (6)
CHEBI:17509 (6)
CHEBI:17992 (6)
CHEBI:17895 (6)
CHEBI:17368 (6)
CHEBI:16870 (6)
CHEBI:16857 (6)
CHEBI:27823 (6)
CHEBI:46961 (6)
CHEBI:16750 (6)
CHEBI:16708 (6)
CHEBI:15756 (6)
CHEBI:16737 (6)
CHEBI:17015 (6)
CHEBI:15891 (6)
CHEBI:17154 (6)
CHEBI:7916 (6)
CHEBI:17596 (6)
CHEBI:30797 (5)

Metabolite Name

Xanthine (8)
Hypoxanthine (5)
Taurine (5)
Adenosine (5)
Uridine (5)
Sebacic acid (4)
Xanthosine (4)
L-Tyrosine (4)
Azelaic acid (4)
L-Phenylalanine (4)
Creatine (4)
L-Threonine (4)
Uric acid (4)
Guanosine (4)
Thymidine (4)
Inosine (4)
Gluconolactone (4)
Sucrose (4)
Pentadecanoic acid (4)
Cytidine (4)
Citric acid (4)
Myristoleic acid (3)
Indole (3)
Biliverdin (3)
Cholic acid (3)
PC(16:0/16:0) (3)
Thiamine (3)
2-Hydroxybutyric acid (3)
D-Glucose (3)
Serotonin (3)

Study type

Transcription profiling by array (15)
RNA-seq of coding RNA (9)
ChIP-seq (5)
Other (4)
RNA-seq of non coding RNA (2)
Unknown experiment type (1)
Cell line - High-throughput sequencing (1)
Transcription profiling by RT-PCR (1)
Comparative genomic hybridization by array (1)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (59)
2023 (43)
2022 (41)
2021 (35)
2020 (35)
2024 (34)
2019 (19)
2017 (18)
2013 (17)
2018 (13)
2015 (11)
2026 (10)
2016 (9)
2012 (8)
2014 (6)
2011 (4)
2010 (4)
2009 (1)
2008 (1)
2004 (1)

Lab affiliation

Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education, Inner Mongolia Agricultural University, China (3)
Department of Burns and Reconstructive Surgery, Xiangya Hospital, Central South University, Changsha, Hunan, P.R. China. (1)
Immunogenetics Laboratory, Shenzhen Blood Center, Shenzhen 518040, China (1)
Shanghai Veterinary Research Institute,Chinese Academy of Agricultural Sciences (1)
Department of Biochemistry and Molecular Cell Biology, Shanghai Key Laboratory for Tumor Microenvironment and Inflammation, Shanghai Jiao Tong University School of Medicine, Shanghai, 200025, P.R. China (1)
Department of Biochemistry, Purdue University State Key Laboratory of Bioelectronics, National Demonstration Center for Experimental Biomedical Engineering Education,Southeast University (1)
Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, Shandong, China (1)
Institute of Neuroscience, College of Medicine, Xiamen University, Xiamen, Fujian, 361105, China (1)
shandong normal university (1)
CAMS Key Laboratory of Translational Research on Lung Cancer, State Key Laboratory of Molecular Oncology, Department of Medical Oncology, National Cancer Center/National Clinical Research Center for Cancer/Cancer Hospital, Chinese Academy of Medical Sciences and Peking Union Medical College (1)
Department of Immunology, Xiangya School of Basic Medicine，Central South University, China (1)
Sichuan university (1)
The First Affiliated Hospital, School of Medicine, Zhejiang University (1)
Department of Ophthalmology, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, 1095 Jie-fang Road, Wuhan, Hubei Province, China (1)
Key Laboratory of Dairy Biotechnology and Engineering, Ministry of Education, Inner Mongolia Agricultural University. (1)
State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, the First Affiliated Hospital, School of Medicine, Zhejiang University, 310003 Hangzhou, China (1)
State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, the First Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou 310003, China (1)
Beijing Advanced Innovation Center for Soft Matter Science and Engineering, Beijing University of Chemical Technology (1)
Institute of Fruit Tree Research. Guangdong Academy of Agricultural Sciences. Tianhe District, Guangzhou 510640, Guangdong Province, China (1)
MCTP,Rogel cancer center, Ann Arbor, Michigan, 48109 (1)
Northwest University (1)
MCTP, Rogel cancer center, Ann Arbor, Michigan, 48109 (1)
Shandong University (1)

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Integrative genomic and proteomic analysis of response of Lactobacillus casei str. Zhang to glucose limitation

Nutrient starvation is an important survival challenge for bacteria during industrial production of functional foods. Lactobacilli are increasingly being used as probiotics in functional foods. As next-generation sequencing technology has greatly advanced, we performed integrative proteomic and geno...

ORGANISM(S): Lactobacillus casei str. Zhang

2018-02-08 | PXD006643 | Pride

Lactobacillus casei str. zhang lace of glucose

Identification of candidate susceptibility and resistance genes of mice infected with Streptococcus suis type 2

There were four groups:control A/J mice;control B6 mice;SS2-infected A/J mice;SS2-infected B6 mice.The RNA samples of four groups were sent to Biostar Genechip Inc. (Shanghai, China) for microarray hybridization. The pooled RNA sample from each group was hybridized to one Illumina mouse Genome Beadc...

ORGANISM(S): Mus Musculus

2012-02-09 | E-MTAB-745 | biostudies-arrayexpress

Upregulation of cannabinoid receptor-1 and fibrotic activation of mouse hepatic stellate cells during Schistosoma J. infection: role of NADPH oxidase.

Not available

S-EPMC6739633 | biostudies-literature

The impact of acute and prior SARS-CoV-2 infection on maternal and neonatal outcomes in pregnant women: a single-center retrospective cohort study.

Not available

S-EPMC11837623 | biostudies-literature

Bioinformatics analysis for the antirheumatic effects of huang-lian-jie-du-tang from a network perspective.

Not available

S-EPMC3856148 | biostudies-literature

Intermodule Coupling Analysis of Huang-Lian-Jie-Du Decoction on Stroke.

Not available

S-EPMC6848980 | biostudies-literature

Transcriptomics and metabolomics of engineered Synechococcus elongatus during photomixotrophic growth

BACKGROUND: Converting carbon dioxide (CO2) into value-added chemicals using engineered cyanobacteria is a promising strategy to tackle the global warming and energy shortage issues. However, most cyanobacteria are autotrophic and use CO2 as a sole carbon source, which makes it h...

2022-03-21 | MTBLS2825 | MetaboLights

The components of Huang-Lian-Jie-Du-Decoction act synergistically to exert protective effects in a rat ischemic stroke model.

Not available

S-EPMC5348361 | biostudies-literature

Qing-Xin-Jie-Yu Granule attenuates myocardial infarction-induced inflammatory response by regulating the MK2/TTP pathway.

Not available

S-EPMC11849043 | biostudies-literature

Qing-Wen-Jie-Re Mixture Ameliorates Poly (I:C)-Induced Viral Pneumonia Through Regulating the Inflammatory Response and Serum Metabolism.

Not available

S-EPMC9240632 | biostudies-literature