Zhang Pan P - OmicsDI

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Unknown (5088)
Proteomics (170)
Transcriptomics (116)
Metabolomics (101)
Genomics (66)
Other (1)

Organisms

Homo sapiens (119)
Mus musculus (73)
Macaca mulatta (5)
Oryza sativa (4)
Pan troglodytes (3)
Campylobacter jejuni (3)
Ovis aries (3)
Mus musculus domesticus (2)
Nicotiana tabacum (2)
Rattus norvegicus (2)
Tardigrada (2)
Mus (2)
Bos grunniens (1)
Brassica oleracea (1)
Rhodopseudomonas palustris (1)
Pongo pygmaeus (1)
Capra hircus (1)
Bemisia tabaci (1)
Listeria monocytogenes EGD-e (1)
Drosophila simulans (1)
Columba livia (1)
Setaria italica (1)
Oryza sativa Japonica Group (1)
Triticum aestivum (1)
Gallus gallus (1)
Saccharomyces cerevisiae (1)
Sus scrofa (1)
Drosophila melanogaster (1)
Clanis bilineata (1)
Vibrio cholerae (1)

Repository

biostudies-arrayexpress (160)
MetaboLights (100)
pride (100)
iProX (61)
EGA (22)
MassIVE (9)
GNPS (1)
GPMDB (1)

Tissue

Cell culture (18)
Brain (11)
Liver (10)
Skin (4)
Whole body (4)
Epithelial cell (4)
Keratinocyte (3)
Lymph node (3)
Blood serum (3)
Blood plasma (3)
Hepatocyte (3)
Lung (3)
B cell (3)
Kidney cell line (2)
Seed (2)
Embryonic stem cell (2)
Ovary (2)
Leukocyte (2)
Heart (2)
Cell suspension culture (2)
Testis (2)
Leaf (2)
Primary cell (2)
Kidney (2)
Colon (2)
Peritoneal macrophage (1)
Decidua (1)
Antler (1)
Blood-lymph (1)
Bile duct (1)

Disease

Acute leukemia (4)
Breast cancer (3)
Wounds and Injuries (3)
Colon cancer (3)
Prostate adenocarcinoma (2)
Lymphoma (2)
Lung cancer (2)
Melanoma (2)
Pancreatic cancer (2)
Malignant neoplasm of ovary (2)
Disease free (2)
Normal (1)
Not Available (1)
Synovial sarcoma (1)
Embryonal rhabdomyosarcoma (1)
Renal Wilms' tumor (1)
Uveal melanoma (1)
Peripheral primitive neuroectodermal tumor (1)
Fibrolamellar carcinoma (1)
Non-alcoholic steatohepatitis (1)
Fibrosarcoma (1)
Head and neck cancer (1)
Malignant mesothelioma (1)
Chronic bronchitis (1)
Stomach cancer (1)
Childhood extraosseous osteosarcoma (1)
Retinoblastoma (1)
Lung carcinoma (1)
Hepatocellular carcinoma (1)
Cholangiocarcinoma (1)

Technology Type

Mass Spectrometry (100)
Mass spectrometry (61)
Shotgun proteomics (60)
Mass spectrometry assay (40)
Bottom-up proteomics (15)
Data-dependent acquisition (10)
Affinity purification coupled with mass spectrometry proteomics (8)
Gel-based experiment (6)
SWATH MS (3)
Illumina Genome Analyzer IIx, Illumina HiSeq 2000 (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Illumina HiSeq 2000 (1)
Proteogenomics (1)
Mass spectrometry imaging (1)
MSE (1)
Data-independent acquisition (1)
SRM/MRM (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (38)
Liquid Chromatography MS - negative - reverse phase (36)
Liquid Chromatography MS - negative - hilic (21)
Illumina NovaSeq 6000 (11)
Orbitrap Fusion Lumos (6)
NextSeq 550 (4)
Illumina HiSeq 4000 (4)
Illumina NovaSeq X (3)
Illumina HiSeq 2000 (3)
NextSeq 500 (3)
DNBSEQ-T7 (2)
Illumina MiSeq (2)
Illumina HiSeq 2500 (2)
Python (1)
Nugen Ovation SPIA; Wafergen’s Apollo liquid handler; KAPA Hyper Prep Library Kit (1)
QIAGEN TissueLyser II (1)
Isoflurane euthanasia chamber (1)
VAHTS Universal V6 RNA-seq Library Prep Kit for Illumina (Vazyme); manual library preparation (1)
Agilent 2200 TapeStation system; centrifuge; Trizol reagent (1)
Flow cytometer (for CD146+/- cell sorting) (1)
MA900, Sony (1)
10x Chromium Controller (1)
Illumina HiSeq 1000 (1)
Instrument (1)
QExactive Plus (1)
SolariX (1)
TripleTOF 5600 (1)
Q Exactive (1)
Q Exactive Plus (1)
Orbitrap Exploris 480 (1)

Publication Date

2026 (66)
2025 (51)
2022 (32)
2024 (32)
2021 (25)
2023 (23)
2010 (23)
2012 (22)
2014 (20)
2013 (19)
2019 (15)
2011 (14)
2016 (11)
2020 (10)
2018 (7)
2015 (7)
2017 (4)
2008 (4)
2005 (4)
2006 (2)
2009 (1)
2007 (1)
2004 (1)

CHEBI ID

CHEBI:17368 (17)
CHEBI:17568 (16)
CHEBI:16704 (16)
CHEBI:16919 (16)
CHEBI:15891 (15)
CHEBI:16708 (14)
CHEBI:17154 (14)
CHEBI:16235 (14)
CHEBI:16335 (14)
CHEBI:55328 (14)
CHEBI:16027 (14)
CHEBI:17895 (14)
CHEBI:17596 (14)
CHEBI:16750 (13)
CHEBI:17748 (13)
CHEBI:16467 (13)
CHEBI:30915 (13)
CHEBI:18089 (13)
CHEBI:30769 (13)
CHEBI:18257 (12)
CHEBI:28842 (12)
CHEBI:16196 (12)
CHEBI:16393 (12)
CHEBI:35581 (12)
CHEBI:17203 (12)
CHEBI:73722 (12)
CHEBI:16411 (12)
CHEBI:48131 (12)
CHEBI:15971 (12)
CHEBI:16347 (12)

Metabolite Name

Creatine (32)
Adenosine (31)
Hypoxanthine (30)
Uracil (29)
Guanine (29)
Taurine (28)
Choline (27)
Guanosine (27)
Uridine (27)
Inosine (26)
Pantothenic acid (25)
Cytidine (25)
Thymidine (24)
Creatinine (24)
Azelaic acid (22)
Adenine (22)
Uric acid (22)
Ornithine (21)
Citric acid (21)
L-Histidine (20)
Sebacic acid (20)
Cytosine (20)
Riboflavin (20)
L-Tyrosine (20)
Thymine (19)
Xanthosine (19)
Histamine (19)
Xanthine (19)
Dimethylglycine (18)
Trigonelline (18)

Study type

Transcription profiling by array (47)
ChIP-seq (39)
RNA-seq of coding RNA (28)
Unknown experiment type (9)
Comparative genomic hybridization by array (5)
ChIP-chip by tiling array (4)
Methylation profiling by high throughput sequencing (4)
CUT&RUN (3)
Animal - High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
Methylation profiling by array (2)
Genotyping by high throughput sequencing (2)
RNA-seq of total RNA (2)
RNA-seq of non coding RNA (2)
ChIP-chip by array (1)
Transcription profiling by RT-PCR (1)
Spatial transcriptomics by high-throughput sequencing (1)
ATAC-seq (1)
Hi-C (1)
Other (1)
Single nucleus RNA sequencing (1)
DNA-seq (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (863)
2022 (720)
2023 (689)
2024 (682)
2021 (529)
2020 (388)
2019 (261)
2017 (188)
2018 (183)
2016 (139)
2015 (127)
2026 (124)
2014 (110)
2013 (84)
2012 (50)
2011 (35)
2010 (34)
2009 (16)
2008 (10)
2007 (6)
2005 (6)
2006 (3)
2004 (1)

Lab affiliation

The Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), Institutes of Basic Medicine and Cancer (IBMC), Chinese Academy of Sciences, Hangzhou 310022, China (2)
Acupuncture and Tuina School/Third Teaching Hospital, Chengdu University of Traditional Chinese Medicine (2)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Sciences (2)
Department of Clinical Laboratory, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (2)
Institute of Dermatology, Chinese Academy of Medical Sciences and Peking Union Medical College, 210042 Nanjing, China. (2)
Lanzhou Veterinary Research Institute (2)
Shanghai Institute of Materia Medica (2)
Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland Faculty of Science, University of Zurich, Switzerland (1)
CAS Key Laboratory of Separation Sciences for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China (1)
Department of Ornamental Horticulture, Sichuan Agricultural University, 211 Huimin Road, Wenjiang District, Chengdu, Sichuan, 611130, P.R. China (1)
UTHealth Houston, Texas, USA (1)
National Yang-Ming University Proteomics Research Center (R648), Taipei, 112 Taiwan (ROC) (1)
Institutes of Biomedicine Science, Fudan University (1)
Department of Biochemistry, Monash University, Clayton,3168, Australia (1)
Institute of Reproductive Health, Tong Ji Medical College, Hua Zhong University of Science and Technology, Wuhan, China. (1)
College of Pharmacy, Jinan University, Guangzhou, China (1)
Chengdu University of Traditional Chinese Medicine (1)
Guangdong Institute of Microbiology, Guangdong Academy of Sciences (1)
Department of biochemistry, Purdue University (1)
Department of Proteomics and Signal Transduction; Max-Planck Institute of Biochemistry; Martinsried, Bavaria, 82152; Germany (1)
State Key Laboratory of Reproductive Medicine and China International Joint Research Center on Environment and Human Health, Nanjing Medical University (1)
Department of Clinical Laboratory Medicine, Shanghai Tenth People’s Hospital of Tongji University, Shanghai, 200072, China (1)
Children's Hospital of Soochow University, Suzhou (1)
Department of Analytical Biochemistry, Groningen Research Institute of Pharmacy, University of Groningen, 9713 AV Groningen, The Netherlands. (1)
College of Plant Science and Technology, Huazhong Agricultural University (1)
National Engineering Laboratory for Animal Breeding, China Agricultural University,No. 2 Yuanmingyuan West Rd., Beijing 100193, China (1)
changchun university of chinese medicine (1)
School of Life Science, Peking University (1)
1State Key Laboratory of Digital Medical Engineering, Department of Otolaryngology Head and Neck Surgery, Zhongda Hospital, School of Life Sciences and Technology, School of Medicine, Advanced Institute for Life and Health, Jiangsu Province High-Tech Key Laboratory for Bio-Medical Research, Southeast University, Nanjing 210096, China.2 Co-Innovation Center of Neuroregeneration, Nantong University, Nantong 226001, China. (1)
Zhejiang Sci-Tech University (1)

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Probing the pan genome of a foodborne bacterial pathogen Listeria monocytogenes

Full title: Probing the pan genome of a foodborne bacterial pathogen Listeria monocytogenes: Implications for its niche adaptation, pathogenesis, and evolution Listeria monocytogenes is a foodborne bacterial pathogen well known for adaptability to diverse environmental and host niches, and a high f...

ORGANISM(S): Listeria monocytogenes EGD-e

2010-04-06 | E-GEOD-20367 | biostudies-arrayexpress

Characterizing the expression of Pan troglodytes olfactory receptor genes

We aim, among other things, to characterize olfactory receptor (OR) genes wich are differentially expressed between olfactory epithelium (OE) and other organ tissues, in chimpanzees (Pan troglodytes), and to make comparisons with human data from a previous series using the same platform. Keywords: C...

ORGANISM(S): Pan troglodytes

2008-10-01 | E-GEOD-11156 | biostudies-arrayexpress

Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris

To address the question of how photosynthetic bacterium Rhodopseudomonas palustris metabolize lignin derived compound p-coumarate, transcriptomics and quantitative proteomics were combined to characterize gene expression profiles at both the mRNA level and protein level in Rhodopseudomonas palustris...

ORGANISM(S): Rhodopseudomonas palustris

2008-05-07 | E-GEOD-6221 | biostudies-arrayexpress

P. aeruginosa proteomics under the compound 7

We used the compond 7 developped by Jianwei Chen's group in P. aeruginosa under different concentrations (blank, 8*MIC and 16*MIC). Then we conducted the differential proteomics testing.

ORGANISM(S): Pseudomonas aeruginosa PAO1

2026-01-17 | PXD069942 | Pride

Thirty-five new species of the spider genus Pimoa (Araneae, Pimoidae) from Pan-Himalaya.

Not available

S-EPMC8050015 | biostudies-literature

Gene expression profiling of histone deacetylase inhibition in epithelioid sarcoma

Epithelioid Sarcoma (ES) is a rare neoplasm uniquely comprised of cells exhibiting both mesenchymal and epithelial features. Having propensity for local and distant recurrence, it can pose a diagnostic dilemma secondary to pathologic complexity. Patients have dismal prognosis due to lack of effectiv...

ORGANISM(S): Homo sapiens

2015-11-03 | E-GEOD-66800 | biostudies-arrayexpress

Deduced Conservation Strategy of the Macaques in China from their Evolutionary Development.

Not available

S-EPMC11659817 | biostudies-literature

Insight into the role of Streptococcus suis zinc metalloprotease C from the new serotype causing meningitis in piglets.

Not available

S-EPMC11290213 | biostudies-literature

Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (V. parahaemolyticus-infected spleen metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7996 | MetaboLights

Linked PNPLA3 polymorphisms confer susceptibility to nonalcoholic steatohepatitis and decreased viral load in chronic hepatitis B.

Not available

S-EPMC4515841 | biostudies-literature

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