Zheng Lin L - OmicsDI

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Unknown (2994)
Proteomics (106)
Transcriptomics (43)
Metabolomics (21)
Genomics (14)
Multiomics (3)

Organisms

Homo sapiens (67)
Chlamydomonas reinhardtii (41)
Pseudomonas canadensis (41)
Marchantia polymorpha subsp. ruderalis (41)
Methylocystis sp. (41)
Porites pukoensis (41)
Bothrops insularis (41)
Bothrops jararaca (41)
Bothrops jararacussu (41)
Bothrops cotiara (41)
Streptomyces coelicolor (41)
Pseudomonas taiwanensis (41)
Mus musculus (31)
Macaca mulatta (3)
Vibrio campbellii (2)
Rattus norvegicus (2)
Oryctolagus cuniculus (2)
Arabidopsis thaliana (2)
Rhizoctonia solani AG-1 IA (1)
Escherichia coli str. K-12 substr. MG1655 (1)
Drosophila melanogaster (1)
Talaromyces marneffei (1)
Triticum aestivum subsp. tibeticum (1)
Enterococcus faecalis (1)
Severe acute respiratory syndrome coronavirus 2 (1)
Macaca fascicularis fascicularis (1)
Triticum aestivum (1)
Danio rerio (1)
Rattus rattus (1)
cellular organisms (1)

Organisms

Escherichia coli str. K-12 substr. MG1655 (1)

Repository

iProX (58)
biostudies-arrayexpress (50)
pride (41)
MetaboLights (21)
EGA (6)
PeptideAtlas (3)
MassIVE (2)
jPOST (1)
PanoramaPublic (1)
ENA (1)

Tissue

Cell culture (13)
Epithelial cell (6)
Others (3)
Testis (3)
Lung (3)
Endothelial cell (2)
Whole body (2)
Permanent cell line cell (2)
Liver (2)
MC-38 cell (1)
Mycelial cord (1)
Cerebellar neuron (1)
Skeletal muscle fiber (1)
Intestinal epithelial cell (1)
Sperm (1)
Malignant cell (1)
Seed (1)
Uterus (1)
Cerebrospinal fluid (1)
Heart (1)
Brain (1)
Blood plasma (1)
Spleen (1)
Leaf (1)
Kidney (1)
B cell (1)
Colon (1)

Disease

Breast cancer (2)
Colon cancer (2)
Bronchopulmonary dysplasia (1)
Endometriosis of uterus (1)
Polycystic Kidney (1)
Bone cancer (1)
Lung cancer (1)
Chronic lymphocytic leukemia (1)
Colorectal cancer (1)
Schizophrenia (1)
Malignant neoplasm of ovary (1)
Kidney cancer (1)
Disease free (1)

Technology Type

Mass Spectrometry (41)
Mass spectrometry (18)
Bottom-up proteomics (12)
Shotgun proteomics (11)
Data-dependent acquisition (5)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-independent acquisition (4)
Gel-based experiment (3)
Mass spectrometry assay (2)
SWATH MS (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
NMR spectroscopy (1)
Olink affinity proteomics (1)
Mass spectrometry imaging (1)
Affinity proteomics (1)
MSE (1)
Top-down proteomics (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (7)
Liquid Chromatography MS - negative - reverse phase (4)
Gas Chromatography MS - (3)
Illumina NovaSeq X (2)
Liquid Chromatography Tandem MS (LC-MS/MS) (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Liquid Chromatography MS - positive - hilic (2)
LTQ Orbitrap Elite (2)
NextSeq 500 (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
TripleTOF 6600 (1)
6530 Q-TOF LC/MS (Agilent) (1)
Liquid Chromatography MS - negative (1)
Bruker (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - positive (1)
Gas Chromatography MS - positive (1)
Xevo QTof MS (Waters) (1)
Liquid Chromatography MS - alternating - hilic (1)
Liquid Chromatography MS - negative - hilic (1)
QExactive (1)

Publication Date

2025 (23)
2023 (17)
2026 (16)
2024 (11)
2013 (10)
2022 (10)
2020 (9)
2014 (9)
2011 (7)
2021 (7)
2019 (6)
2012 (6)
2010 (6)
2015 (5)
2017 (3)
2009 (3)
2018 (3)
2016 (2)

UNIPROT ID/AC

Q99619 (3)
Q6ZVE7 (3)
Q8N4U5 (3)
Q9UBZ4 (3)
Q96QP1 (3)
Q9Y576 (3)
Q6ZTQ3 (3)
Q9H633 (3)
Q96PC5-2 (3)
Q96PC5 (3)
Q8TDW5 (3)
Q9NXZ2 (3)
Q8IZP6 (3)
Q9UHA2 (3)
Q9C019 (3)
Q96EP1 (3)
Q8IYM2 (3)
Q86SJ2 (3)
Q6MZQ0 (3)
Q9Y2C3 (3)
O00338 (3)
Q02833 (3)
O43194 (3)
Q9BZD2 (3)
Q8WUA8 (3)
Q8NC06 (3)
Q8N1W1 (3)
Q6NSJ2 (3)
Q8WYP3 (3)
Q3MII6 (3)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000247315 (3)
ENSG00000170477 (3)

CHEBI ID

CHEBI:30772 (4)
CHEBI:15971 (4)
CHEBI:30769 (4)
CHEBI:30776 (3)
CHEBI:28946 (3)
CHEBI:27732 (3)
CHEBI:17992 (3)
CHEBI:16199 (3)
CHEBI:15366 (3)
CHEBI:17895 (3)
CHEBI:16977 (3)
CHEBI:17203 (3)
CHEBI:18019 (3)
CHEBI:16015 (3)
CHEBI:17750 (3)
CHEBI:17596 (3)
CHEBI:16335 (3)
CHEBI:15428 (3)
CHEBI:32816 (3)
CHEBI:15741 (3)
CHEBI:16737 (3)
CHEBI:71225 (2)
CHEBI:163396 (2)
CHEBI:37070 (2)
CHEBI:63791 (2)
CHEBI:16796 (2)
CHEBI:16135 (2)
CHEBI:6731 (2)
CHEBI:17189 (2)
CHEBI:61993 (2)

Metabolite Name

Creatinine (3)
3-methyvalerate (2)
2-methybutyrate (2)
Isobuturate (2)
Valerate (2)
Propionate (2)
Isocaproate (2)
Glu-Ile (2)
L-Citrulline (2)
Caffeine (2)
Isovalerate (2)
Tyramine (2)
Lactose (2)
Butyrate (2)
Acetate (2)
Val-Val (2)
Trigonelline (2)
L-Pipecolic acid (2)
Betaine (2)
Phosphocholine (2)
L-Tyrosine (2)
Leu-Ile (2)
Pyrrolidine (2)
Raffinose (2)
Maltotriose (2)
Maltose (2)
L-Tryptophan (2)
Citrate (2)
Hypoxanthine (2)
Creatine (2)

First Public Date

2014 (1)

Classification

bacteria (1)

Study type

Transcription profiling by array (21)
RNA-seq of coding RNA (13)
ChIP-seq (5)
Transcription profiling by RT-PCR (2)
Other (2)
RNA-seq of coding RNA from single cells (2)
Methylation profiling by high throughput sequencing (2)
Baseline (1)
Comparative genomic hybridization by array (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (510)
2022 (398)
2024 (382)
2023 (367)
2021 (299)
2020 (236)
2019 (155)
2018 (121)
2017 (113)
2015 (110)
2016 (89)
2026 (73)
2014 (58)
2013 (48)
2012 (35)
2011 (19)
2010 (11)
2009 (10)
2007 (3)
2008 (2)
2006 (2)
2005 (2)
2004 (1)

Lab affiliation

State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, Guangdong, P. R. China (2)
Department of Bioinformatics and Computational Biology, The University of Texas MD Anderson Cancer Center (2)
Zhejiang University College of Pharmaceutical Sciences (1)
GIBH (1)
Department of Molecular Biolgy, Princeton University, USA (1)
Institute of Animal Science and Veterinary Medicine, Hainan Academy of Agricultural Sciences (1)
Peking University Institute of Advanced Agricultural Sciences, (1)
Tianjin First Central Hospital Clinic Institute, Tianjin Medical University, Tianjin, 300070, P.R. China (1)
The Center for Chemical Biology, Drug Discovery and Design Center, State Key Laboratory of Drug Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China (1)
Key Laboratory of Women and Children’s Critical Diseases Research, Fujian Maternity and Child Health Hospital College of Clinical Medicine for Obstetrics & Gynecology and Pediatrics, Fujian Medical University, Fuzhou, Fujian Province, China (1)
Department of Clinical Laboratory, National Center for Respiratory Medicine, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou Institute of Respiratory Health, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong 510120, China. (1)
Department of Pediatrics, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology (1)
Medical school of Nanjing Universtiy (1)
State Key Laboratory of Reproductive Medicine and Offspring Health, Center for Reproduction and Genetics, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, Suzhou 215002, China (1)
State Key Laboratory of Reproductive Medicine and Offspring Health, Center for Reproduction and Genetics, The Affiliated Suzhou Hospital of Nanjing Medical University, Suzhou Municipal Hospital, Gusu School, Nanjing Medical University, Suzhou 215002, China. (1)
Dr. Zongmin Zhao. Assistant Professor, Department of Pharmaceutical Sciences, UIC Retzky College of Pharmacy, University of Illinois Chicago (1)
1Lineberger Comprehensive Cancer Center, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA 2Department of Biochemistry and Biophysics, University of North Carolina at Chapel Hill School of Medicine, Chapel Hill, NC 27599, USA 3Curriculum in Genetics and Molecular Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA (1)
The First Affiliated Hospital of Fujian Medical University (1)
Fujian Agriculture and Forestry University (1)
Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai, China. (1)
State Key Laboratory of Respiratory Disease, National Clinical Research Center for Respiratory Disease, Guangzhou Institute of Respiratory Health, the First Affiliated Hospital of Guangzhou Medical University, Guangzhou 510182, China (1)
Institute of Reproductive Medicine, Medical School, Nantong University, Nantong 226001, China (1)
State Key Laboratory of Genetic Engineering, Institutes of Biomedical Sciences, Human Phenome Institute, School of Life Sciences, Zhongshan Hospital, Fudan University (1)
Nurturing Station for the State Key Laboratory of Subtropical Silviculture, Zhejiang A 20 & F University, Dong Hu Campus, 88 Northern Circle Road, Linan 311300, China. (1)
Dana-Farber Cancer Institute (1)
Reproductive and Genetic Hospital of CITIC-XIANGYA (1)
Huazhong Agricultural University (1)
Laboratory of Angiogenesis and Vascular Metabolism, Department of Oncology, KU Leuven, Leuven 3000, Belgium (1)
Department of Human Anatomy, Histology and Embryology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology (1)

Tags

xref:PubMed:19767843 (1)
pathogen (1)
pathogen:bacterium (1)

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Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (V. parahaemolyticus-infected spleen metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7996 | MetaboLights

Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (L-Alanine-treated macrophage metabolomics)

2024-09-26 | MTBLS7986 | MetaboLights

Multi-omics driven paradigm for construction of traditional Chinese Medicine Zheng (syndrome) diagnosis and treatment model, taking Shi Zheng (syndrome of dampness) as an example.

Not available

S-EPMC11890557 | biostudies-literature

Metabolite signatures of diverse Camellia sinensis tea populations

Tea plants (Camellia sinensis) present an excellent system to study evolution and diversification of specialized metabolites due to their abundance in classes, numbers and contents. A large number of tea cultivars have been cultivated throughout the world not only because of their adaption to differ...

2020-10-05 | MTBLS1405 | MetaboLights

Twenty-three new synonyms of the Eastern common groundhopper, Tetrixjaponica (Bolivar, 1887) (Orthoptera, Tetrigidae).

Not available

S-EPMC10756066 | biostudies-literature

Sensory gene identification in the transcriptome of the ectoparasitoid Quadrastichus mendeli.

Not available

S-EPMC8102506 | biostudies-literature

Transcriptome of iPSC-derived Neural Cells with Heterozygous Knockout in CHD8

CHD8, encoding Chromodomain helicase DNA binding protein 8, is a top autism spectrum disorders (ASDs) risk gene. To better understanding the molecular links between CHD8 functions and ASD, we have applied the CRISPR/Cas9 technology to knockout one copy of CHD8 in induced pluripotent stem cells (iPSC...

ORGANISM(S): Homo sapiens

2015-11-05 | E-GEOD-71594 | biostudies-arrayexpress

The lipid-metabolism enzyme ECI2 reduces neutrophil extracellular traps formation for colorectal cancer suppression

Abnormalities in ether lipid metabolism as well as the formation of neutrophil extracellular traps have recently been recognized as detrimental factors affecting tumorigenesis and progression. However, the role of abnormal ether lipid metabolism in colorectal cancer (CRC) evolution has not been repo...

2024-10-01 | MTBLS10323 | MetaboLights

Association of 4qA-Specific Distal D4Z4 Hypomethylation With Disease Severity and Progression in Facioscapulohumeral Muscular Dystrophy.

Not available

S-EPMC10382269 | biostudies-literature

Smilax china L. Polysaccharide Alleviates Dextran Sulphate Sodium-Induced Colitis and Modulates the Gut Microbiota in Mice.

Not available

S-EPMC10137970 | biostudies-literature

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3178 Results

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Organisms

Organisms

Repository

Tissue

Disease

Technology Type

Instrument Platform

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UNIPROT ID/AC

ENSEMBL ID

CHEBI ID

Metabolite Name

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Classification

Study type

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Lab affiliation

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