Zheng Liu L - OmicsDI

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Unknown (9671)
Proteomics (275)
Transcriptomics (95)
Metabolomics (60)
Genomics (27)
Multiomics (3)
Models (1)

Organisms

Homo sapiens (128)
Mus musculus (46)
Arabidopsis thaliana (7)
Macaca mulatta (4)
Drosophila melanogaster (3)
Triticum aestivum (3)
Urocitellus parryii (2)
Pan troglodytes (2)
Zea mays (2)
Oryza sativa Japonica Group (2)
Saccharomyces cerevisiae (2)
Spalax carmeli (1)
Nannospalax galili (1)
Cynoglossus semilaevis (1)
Oryza rufipogon (1)
Cordyceps militaris (1)
Capra hircus (1)
Streptococcus suis 05ZYH33 (1)
Marmota monax (1)
Ambystoma mexicanum (1)
Dirofilaria immitis (1)
Leishmania major (1)
Bacillus thuringiensis (1)
Brassica napus (1)
Streptococcus suis (1)
Streptomyces coelicolor (1)
Solanum tuberosum (1)
Setaria italica (1)
Solanum lycopersicum (1)
Caenorhabditis elegans (1)

Repository

pride (145)
iProX (121)
biostudies-arrayexpress (109)
MetaboLights (58)
EGA (13)
MassIVE (4)
PeptideAtlas (3)
GNPS (2)
jPOST (2)
BioModels (1)

Tissue

Cell culture (38)
Epithelial cell (16)
Blood plasma (8)
Colon (6)
Early embryonic cell (6)
Leaf (6)
Liver (5)
Lung (5)
Testis (5)
Blood (4)
Hepatocyte (4)
Whole body (4)
Others (3)
Brain (3)
Kidney (3)
Permanent cell line cell (3)
Blood serum (2)
Fibroblast (2)
Mycelial cord (2)
Prostate cancer cell line (2)
Skin (2)
Adipose tissue (1)
Blood cancer cell (1)
Bone cancer cell line (1)
Bone marrow (1)
Brain cancer cell line (1)
Breast cancer cell (1)
Breast cancer cell line (1)
Cecum cancer cell line (1)
Cerebellar neuron (1)

Disease

Disease free (7)
Colon cancer (4)
Breast cancer (3)
Cervix carcinoma (3)
Malignant neoplasm of ovary (2)
VSV infection (1)
Normal (1)
Adult hepatocellular carcinoma (1)
Bronchopulmonary dysplasia (1)
Endometriosis of uterus (1)
Liver cancer (1)
Mastitis (1)
Non-alcoholic steatohepatitis (1)
Pancreatic ductal adenocarcinoma (1)
Plasmodium falciparum malaria (1)
Primary ovarian insufficiency (1)
Prostate adenocarcinoma (1)
Schizophrenia (1)
Thyroid cancer (1)
Type 2 diabetes mellitus (1)

Technology Type

Mass Spectrometry (145)
Shotgun proteomics (59)
Mass spectrometry (46)
Bottom-up proteomics (18)
Data-independent acquisition (17)
Data-dependent acquisition (15)
Affinity purification coupled with mass spectrometry proteomics (13)
Gel-based experiment (13)
Mass spectrometry assay (11)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
Top-down proteomics (5)
NMR spectroscopy (3)
SWATH MS (2)
Illumina HiSeq 2500 (ILLUMINA), Illumina HiSeq 4000 (ILLUMINA) (1)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Affinity proteomics (1)
HDMSE (1)
MSE (1)
Mass spectrometry imaging (1)
Olink affinity proteomics (1)
Proteogenomics (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (18)
Liquid Chromatography MS - negative - reverse phase (17)
Liquid Chromatography MS - positive - hilic (7)
Liquid Chromatography MS - negative - hilic (5)
Illumina HiSeq 2000 (4)
Liquid Chromatography MS - positive (4)
Illumina HiSeq 2500 (3)
Liquid Chromatography MS - (3)
Liquid Chromatography MS - negative (3)
Liquid Chromatography MS - alternating - hilic (3)
Liquid Chromatography MS - alternating - reverse phase (3)
Q Exactive HF (2)
TripleTOF 6600 (2)
Liquid Chromatography MS - - reverse phase (2)
Gas Chromatography MS - (2)
Bruker (2)
Liquid Chromatography MS - alternating - reverse-phase (2)
Illumina Genome Analyzer II (1)
HiSeq X Ten (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Q Exactive mass spectrometer (Thermo Scientific) (1)
Liquid Chromatography MS - negative - HILIC - Triple 6600 (AB Sciex) (1)
Liquid Chromatography MS - negative - HILIC - TripleTOF 6600 (AB Sciex) (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Flow injection analysis MS – POS (1)
Liquid Chromatography MS – NEG (1)
Liquid Chromatography MS – POS (1)
Liquid Chromatography MS - positive - HILIC - TripleTOF 6600 (AB Sciex) (1)

Publication Date

2025 (49)
2023 (41)
2022 (38)
2026 (37)
2024 (31)
2020 (29)
2021 (27)
2019 (22)
2012 (17)
2013 (16)
2016 (14)
2015 (14)
2014 (14)
2011 (12)
2010 (12)
2018 (7)
2017 (4)
2009 (4)
2007 (3)
2005 (1)
2004 (1)

UNIPROT ID/AC

A0A024R563 (3)
A0A024R8H9 (3)
A0A024RAN2 (3)
A0A024RC46 (3)
A0A087WUD1 (3)
A0A087WVZ5 (3)
A0A087WWK8 (3)
A0A087WXI0 (3)
A0A087WZE9 (3)
A0A087X1S3 (3)
A0A0A0MR66 (3)
A0A0A0MS51 (3)
A0A0A0MSA7 (3)
A0A0B4J220 (3)
A0A0C4DG89 (3)
A0A0C4DGT3 (3)
A0AV96 (3)
A0AVT1 (3)
A0FGR8 (3)
A0FGR8-2 (3)
A0FGR8-6 (3)
A0JLT2 (3)
A0JNW5 (3)
A0MZ66 (3)
A0PJW6 (3)
A0PK00 (3)
A1A4S6 (3)
A1L0T0 (3)
A1L170 (3)
A1L390 (3)

ENSEMBL ID

ENSG00000147251 (3)
ENSG00000170477 (3)
ENSG00000247315 (3)

CHEBI ID

CHEBI:17368 (18)
CHEBI:16335 (17)
CHEBI:16704 (16)
CHEBI:15891 (15)
CHEBI:16919 (15)
CHEBI:16856 (14)
CHEBI:17015 (14)
CHEBI:16708 (14)
CHEBI:17509 (14)
CHEBI:17596 (14)
CHEBI:16870 (13)
CHEBI:17750 (13)
CHEBI:18132 (13)
CHEBI:16750 (13)
CHEBI:16737 (13)
CHEBI:15756 (13)
CHEBI:17154 (12)
CHEBI:15428 (12)
CHEBI:16040 (12)
CHEBI:16680 (12)
CHEBI:32816 (12)
CHEBI:28875 (12)
CHEBI:15971 (12)
CHEBI:17568 (12)
CHEBI:16015 (12)
CHEBI:15741 (12)
CHEBI:55328 (12)
CHEBI:17295 (12)
CHEBI:18344 (12)
CHEBI:16192 (11)

Metabolite Name

Hypoxanthine (17)
Riboflavin (15)
Adenosine (14)
Guanosine (14)
Uridine (14)
Creatine (13)
Taurine (12)
Xanthine (12)
Inosine (12)
Glutathione (11)
Betaine (10)
L-Palmitoylcarnitine (10)
Deoxycholic acid (10)
Cholic acid (10)
Biopterin (9)
5'-Methylthioadenosine (9)
Glycine (9)
Guanine (9)
Deoxyguanosine (9)
Adenine (9)
Glycerophosphocholine (9)
L-Carnitine (9)
UDP (8)
AMP (8)
Sphingosine (8)
Sphingosine 1-phosphate (8)
Ergothioneine (8)
Phytosphingosine (8)
L-Kynurenine (8)
Oleamide (8)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

-17.026549 (1)
15.994915 (1)
57.021464 (1)

Study type

Transcription profiling by array (39)
RNA-seq of coding RNA (32)
ChIP-seq (7)
Methylation profiling by high throughput sequencing (6)
RNA-seq of non coding RNA (5)
Unknown experiment type (4)
Comparative genomic hybridization by array (4)
Other (4)
Animal - High-throughput sequencing (2)
Transcription profiling by tiling array (1)
Genotyping by array (1)
MicroRNA profiling by array (1)
DNA-seq (1)
Methylation profiling by array (1)
RNA-seq of coding RNA from single cells (1)

Release Date

2025 (1522)
2022 (1332)
2024 (1216)
2023 (1208)
2021 (1050)
2020 (809)
2019 (558)
2018 (426)
2017 (345)
2016 (281)
2015 (265)
2026 (214)
2014 (167)
2013 (127)
2012 (95)
2011 (65)
2010 (36)
2009 (25)
2008 (15)
2007 (8)
2006 (6)
2004 (5)
2005 (4)
2001 (1)

Lab affiliation

Huazhong Agricultural University (4)
The Sixth Affiliated Hospital, Sun Yat-sen University, Guangzhou, Guangdong, China (4)
Tsinghua University, China (4)
BGI Research (3)
CAS Key Laboratory of Separation Sciences for Analytical Chemistry, National Chromatographic R&A Center, Dalian Institute of Chemical Physics, Chinese Academy of Sciences (CAS), Dalian 116023, China (2)
Department of Urology, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, Guangzhou, Guangdong, P. R. China (2)
Lanzhou University (2)
Penn State College of Medicine, Hershey, PA, USA (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Associate Editor, ACS Chemical Biology (2)
Professor and Chair of Chemical Biology, Peking-Tsinghua Center for Life Sciences Peking University, Beijing, China. Executive Editor, ACS Chemical Biology (2)
School of Life Science and Technology ShanghaiTech University 100 Haike Road, Shanghai, China (2)
Sichuan University (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
The First Affiliated Hospital with Nanjing Medical University (2)
Tianjin Key Laboratory of Biosensing and Molecular Recognition, Research Center for Analytical Science, Frontiers Science Center for New Organic Matter, College of Chemistry, Nankai University, Tianjin 300071, China (2)
Tianjin Medical University Cancer Institute and Hospital (2)
West China Second University Hospital, Sichuan University (2)
1 Department of Emergency, Ruijin Hospital, Shanghai Jiao Tong University School of Medicine (1)
1 Max-Planck Institute for Terrestrial Microbiology, Karl-von-Frisch Strasse 14, 35043 Marburg, Germany 2 University of Marburg, Center for Synthetic Microbiology (SYNMIKRO) & Departments of Chemistry and Biology, Karl-von-Frisch Strasse 14, 35043 Marburg, Germany (1)
1 Shanghai Key Laboratory of Tuberculosis, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, PR China 2 Department of Microbiology and Immunology, Tongji University School of Medicine, Shanghai 200049, PR China 3 Clinical Translation Research Center, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai 200433, China. (1)
1Department of Pathology, Dana-Farber/Harvard Cancer Center, PhD Program in Immunology, Harvard Medical School; Department of Laboratory Medicine, Boston Children's Hospital, Enders Research Building, Room 811, Boston, MA, 02115, USA (1)
1Peking-Tsinghua Center for Life Sciences, Peking University, Beijing 100871, China 2Academy of Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China 3Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China (1)
Anhui Medical University,China (1)
Army medical university (1)
Artemisinin Research Center, Institute of Chinese Materia Medica, China Academy ofChinese Medical Sciences (1)
Beijing Chaoyang Hospital, Capital Medical University (1)
Ben May department of cancer research, The university of Chicago (1)
Center for Cell Lineage and Development, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, GIBH-HKU Guangdong-Hong Kong Stem Cell and Regenerative Medicine Research Centre, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China. (1)
City of Hope Beckman Research Institute (1)
College of Agronomy, Shandong Agricultural University, Tai’an, 271018 Shandong, China (1)

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Exogenous L-Alanine promotes phagocytosis multidrug-resistant bacterial pathogens (V. parahaemolyticus-infected spleen metabolomics)

Multidrug-resistant bacteria present a major threat to public health. Therefore, new drugs or approaches are urgently needed to manage and mitigate this threat. Here, we screen the molecular candidates that allow the survival of mice upon Vibrio parahaemolyticus infection by integrated p...

2024-09-26 | MTBLS7996 | MetaboLights

Multi-Omics Decoding of Potential Microbial-Genetic Synergy Underlying Polysaccharide and Glycosidic Polymer Biosynthesis in Two Cultivars of <i>Lilium brownii</i> var. <i>viridulum</i> Baker.

Not available

S-EPMC12654296 | biostudies-literature

A comprehensive proteome-wide lysine crotonylation profiling of papaya (Carica papaya L.)

Lysine crotonylation of histone proteins is a recently-identified post-translational modification with multiple cellular functions. However, lysine crotonylation of non-histone proteins in fruit cells has not yet been studied. Using high-resolution LC-MS/MS coupled with highly sensitive immune-affin...

ORGANISM(S): Carica papaya

2017-12-18 | PXD008166 | Pride

Twenty-three new synonyms of the Eastern common groundhopper, Tetrixjaponica (Bolivar, 1887) (Orthoptera, Tetrigidae).

Not available

S-EPMC10756066 | biostudies-literature

The complete mitochondrial genome of Choristoneura metasequoiacola Liu,1983 (Lepidoptera: Tortricidae).

Not available

S-EPMC10251794 | biostudies-literature

Qing-Re-Xiao-Zheng Formula Modulates Gut Microbiota and Inhibits Inflammation in Mice With Diabetic Kidney Disease.

Not available

S-EPMC8481597 | biostudies-literature

iTRAQ-based phospho-proteomics identifies a critical role of ATF2 in pseudorabies virus replication

Pseudorabies virus (PRV), the etiological agent of Aujeszky’s disease, is a swine pathogen of the alphaherpesvirinae subfamily resulting in devastating neurological and respiratory disorders in piglets, or abortion in pregnant sows.Here, we performed isobaric tags for relative and absolute quantitat...

ORGANISM(S): Bos taurus (Bovine)

2022-10-13 | PXD014685 | Pride

Pseudorabies virus Phosphorylation Itraq Atf2

Liu1999_PulsatileSecretion

This a model from the article: A dynamical model for the pubsatile secretion of the hypothalamo-pituitary-adrenal axis. Yi-wei Liu, Zhi-Hong Hu, Jian-Hua Peng and Bing-Zheng Liu Mathematical and Computer Modelling Volume 29, Issue 4, February 1999, Pag...

2005-01-01 | MODEL1006230060 | BioModels

Gut microbiota production of trimethyl-5-aminovaleric acid reduces fatty acid oxidation and accelerates cardiac hypertrophy

Numerous studies found intestinal microbiota alterations which are thought to affect the development of various diseases through the production of gut-derived metabolites. However, the specific metabolites and their pathophysiological contribution to cardiac hypertrophy or heart failure progression ...

2021-12-08 | MTBLS3174 | MetaboLights

LGR4 modulates breast cancer initiation, metastasis, and cancer stem cells.

Not available

S-EPMC5901378 | biostudies-literature

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