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TranscriptomicsTranscription profiling by high throughput sequencing of 7 tissues of maize inbred line Zheng 58
RNA-sequencing of 5 tissues of maize inbred line Zheng 58: mature silk (MS), mature pollen (MP), mature ovary (MO), and 6-days old seedling (SL), immature silk (IMS)
ORGANISM(S): Zea mays 
2013-01-26 | E-MTAB-964 | biostudies-arrayexpress
TranscriptomicsComparison of the genomic structures and transcription between S. cerevisiae strains ZTW1 and ZGR3
To determine how does genomic structural variation changed the phenotypes of yeast. aCGH and RNA-Seq were performed to reveal the differeces in the genomic structures and transcription of ZTW1 and ZGR3. This SuperSeries is composed of the following subset Series: GSE40905: Transcription profile ana...
ORGANISM(S): Saccharomyces cerevisiae 
2012-10-10 | E-GEOD-41017 | biostudies-arrayexpress
TranscriptomicsComparative Genomic Hybridization of S. cerevisiae YJS329 and BYZ1
The environmental stresses and inhibitors encounted by Saccharomyces cerevisiae strains are main limiting factors in bioethanol fermentation. Investigation of the molecular mechanisms underlying the stresses-related phenotypes diversities within and between S. cerevisiae populations could guide the ...
ORGANISM(S): Saccharomyces cerevisiae 
2011-09-14 | E-GEOD-31872 | biostudies-arrayexpress
TranscriptomicsHigh-throughput sequencing analysis identify miRNAs in 7dpf F1-zebrafish under β-diketone antibiotics exposure to F0-zebrafish
Small RNA high-throughput sequencing technology was used to characterize the miRNAs in F1-zebrafish after 90-day β-diketone antibiotic (DKA) exposure to F0-zebrafish at 6.25 and 12.5 mg/L. The small RNA libraries from 7-dpf F1-zebrafish were constructed. In total, 10,117,347, 9,818,830 and 12,049,...
ORGANISM(S): Danio rerio 
2016-07-30 | E-GEOD-85004 | biostudies-arrayexpress
TranscriptomicsThe unfolded protein response in fission yeast modulates stability of select mRNAs to maintain protein homeostasis
Homeostatic control mechanisms are essentil to life. One such mechanism, the unfolded protein response (UPR) operates in all eukarytic cells to adjust protein folding capacity of the endoplasmic reticulum (ER) according to need. UPR induction in all eurkarytic cells to date involves Ire1 (kinase/end...
ORGANISM(S): Schizosaccharomyces pombe 
2012-11-21 | E-GEOD-40298 | biostudies-arrayexpress
TranscriptomicsComparison of the genomic structures between S. cerevisiae strains ZGR3 and BYZ1
To determine how does genomic structural variation changed the phenotypes of yeast. aCGH and RNA-Seq were performed to reveal the differeces in the genomic structures and transcription of ZTW1 and ZGR3. In the aCGH experiment, strain BYZ1 (S288c background) was used as the control. In the RNA-Seq ex...
ORGANISM(S): Saccharomyces cerevisiae 
2012-10-10 | E-GEOD-41108 | biostudies-arrayexpress
TranscriptomicsMutation Mapping of 31 Streptococcus suis strains
Identification of Genes and Genomic Islands Correlated with High Pathogenicity through Tilling Microarray-Based Comparative Genomics in S. suis. Streptococcus suis is an important zoonotic pathogen that can cause meningitis and sepsis in both pigs and humans. S. suis isolates have been categorized ...
ORGANISM(S): Streptococcus suis 
2012-08-08 | E-GEOD-26052 | biostudies-arrayexpress
TranscriptomicsChromatin Immunoprecipitation of E2A-PBX1 in the cell line 697
Data from "Direct and indirect targets of the E2A-PBX1 leukemia-specific fusion protein" to be published in PLOS One, authors Christofer Diakos, Yuanyuan Xiao, Shichun Zheng, Leo Kager, Michael Dworzak, Joseph L. Wiemels The experiment showed direct targets of the fusion protein. In the m...
ORGANISM(S): Homo sapiens 
2013-11-23 | E-GEOD-52653 | biostudies-arrayexpress
MetabolomicsPrediction and evaluation of the effect of pre-centrifugation sample management on the measurable untargeted LC-MS plasma metabolome

Optimal handling is the most important means to ensure adequate sample quality. We aimed to investigate whether pre-centrifugation delay time and temperature could be accurately predicted and to what extent variability induced by pre-centrifugation management can be adjusted for. We used untarget...

2021-10-13 | MTBLS2259 | MetaboLights
TranscriptomicsTranscription profiling of human gingival epithelial cell transcriptional responses to commensal and opportunistic oral microbial species.
Transcriptional profiling was utilized to define the biological pathways of gingival epithelial cells modulated by co-culture with the oral commensal S. gordonii and the opportunistic commensal F. nucleatum. We used microarrays to detail the global programme of gene expression underlying infection a...
ORGANISM(S): Homo sapiens 
2009-04-28 | E-GEOD-6927 | biostudies-arrayexpress
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