Zheng Yuan Y - OmicsDI

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Unknown (2193)
Proteomics (69)
Metabolomics (11)
Transcriptomics (9)
Genomics (7)
Models (1)

Organisms

Andropogon gerardi (45)
Bacteria (45)
Canis lupus familiaris (45)
Clostridium perfringens (45)
Cnidaria (45)
Cricetulus griseus (45)
Eukaryota (45)
Fasciola (45)
Hepatitis B virus (45)
Human betaherpesvirus 5 (45)
Madurella mycetomatis (45)
Mesocricetus auratus (45)
Miscanthus x giganteus (45)
Mus musculus (45)
Mycobacterium tuberculosis (45)
Orthoflavivirus (45)
Panicum virgatum (45)
Platyhelminthes (45)
Pseudomonas aeruginosa AES-1R (45)
Rattus norvegicus (45)
Homo sapiens (23)
Mus musculus (8)
Triticum aestivum (3)
Macaca mulatta (2)
cellular organisms (1)
Danio rerio (1)
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Severe acute respiratory syndrome coronavirus 2 (1)
Solanum lycopersicum (1)

Repository

pride (45)
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biostudies-arrayexpress (10)
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Tissue

Cell culture (10)
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Disease

Disease free (3)
Acute leukemia (2)
Influenza (2)
Breast cancer (1)
Colon cancer (1)
Lung carcinoma (1)
Malignant neoplasm of ovary (1)

Technology Type

Mass Spectrometry (45)
Shotgun proteomics (19)
Mass spectrometry (11)
Bottom-up proteomics (9)
Data-independent acquisition (6)
Data-dependent acquisition (5)
Affinity purification coupled with mass spectrometry proteomics (4)
Gel-based experiment (3)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
Affinity proteomics (1)
Olink affinity proteomics (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (3)
Liquid Chromatography MS - positive - reverse phase (3)
Liquid Chromatography MS - negative (2)
Liquid Chromatography MS - positive - hilic (2)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
6530 Q-TOF LC/MS (Agilent) (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (1)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - alternating - hilic (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - negative - hilic (1)

Publication Date

2026 (18)
2025 (15)
2024 (14)
2022 (6)
2021 (6)
2020 (6)
2019 (5)
2018 (5)
2017 (3)
2012 (3)
2023 (3)
2016 (2)
2015 (2)
2010 (2)
2011 (1)

CHEBI ID

CHEBI:17895 (4)
CHEBI:16347 (4)
CHEBI:24814 (3)
CHEBI:60647 (3)
CHEBI:17748 (3)
CHEBI:17597 (3)
CHEBI:15971 (3)
CHEBI:16828 (3)
CHEBI:18347 (3)
CHEBI:16870 (3)
CHEBI:16040 (3)
CHEBI:16737 (3)
CHEBI:17750 (3)
CHEBI:16349 (3)
CHEBI:17154 (3)
CHEBI:16335 (3)
CHEBI:17203 (3)
CHEBI:28875 (3)
CHEBI:30832 (3)
CHEBI:17992 (3)
CHEBI:28238 (3)
CHEBI:16196 (3)
CHEBI:16708 (3)
CHEBI:55328 (3)
CHEBI:16704 (3)
CHEBI:15756 (3)
CHEBI:17821 (3)
CHEBI:20067 (3)
CHEBI:17351 (3)
CHEBI:22984 (1)

Metabolite Name

Uridine (3)
L-Carnitine (3)
N-Acetyltyramine (2)
DL-Dopa (2)
L-Citrulline (2)
Geranic acid (2)
N-Acetylputrescine (2)
L-Norvaline (2)
7-Methylguanine (2)
Ketoleucine (2)
L-Pipecolic acid (2)
L-Histidine (2)
3-Hydroxybutyric acid (2)
Hypoxanthine (2)
Adenine (2)
Xanthine (2)
Thymidine (2)
Myristic acid (2)
Oleic acid (2)
2-Methylglutaric acid (2)
4-Hydroxybenzaldehyde (2)
Linoleic acid (2)
L-Norleucine (2)
Glycerophosphocholine (2)
Pantothenol (2)
Creatinine (2)
Cytidine (2)
Creatine (2)
Adenosine (2)
Cytosine (2)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

N6 (1)

Study type

Transcription profiling by array (6)
RNA-seq of coding RNA (2)
Methylation profiling by high throughput sequencing (1)
RNA-seq of non coding RNA (1)

Release Date

2025 (398)
2022 (309)
2024 (281)
2023 (281)
2021 (234)
2020 (181)
2019 (118)
2018 (95)
2017 (66)
2016 (65)
2026 (55)
2015 (45)
2014 (24)
2012 (14)
2011 (10)
2013 (10)
2010 (4)
2009 (4)
2008 (3)
2007 (2)
2006 (1)
2005 (1)
2004 (1)
2002 (1)

Lab affiliation

Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University (4)
BGI Research (3)
Department of Biochemistry and Structural Biology and Center for Innovative Drug Discovery School of Medicine, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229, United States (2)
Lab of Jie Zheng, Neuroscience Research Institute and Department of Neurobiology, School of Basic Medical Sciences, Peking University, Beijing 100083, P.R. China (2)
State Key Laboratory of Reproductive Medicine and Offspring Health， Nanjing Medical University, Nanjing, China. (2)
1 Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. 2 Center of Clinical Oncology, The Affiliated Hospital of Xuzhou Medical University, Xuzhou, China. 3 State Key Laboratory Jiangsu Center for the Collaboration and Innovation of Cancer Biotherapy, Cancer Institute, Xuzhou Medical University, Xuzhou, Jiangsu, China. (1)
Center for Cell Lineage and Development, CAS Key Laboratory of Regenerative Biology, Guangdong Provincial Key Laboratory of Stem Cell and Regenerative Medicine, GIBH-HKU Guangdong-Hong Kong Stem Cell and Regenerative Medicine Research Centre, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences, Guangzhou, China. (1)
Center for Cultivation of Subtropical Forest Resources (CCSFR), Zhejiang A & F University, Linan, Hangzhou, 311300, People's Republic of China. (1)
China-Japan Friendship Hospital, Beijing, China (1)
China-Japan Friendship Hospital, China (1)
College of Horticulture, Vegetable Genetics and Breeding Laboratory, Anhui Agricultural University, 130 West Changjiang Road, 230036 Hefei, Anhui, China; (1)
College of Veterinary Medicine, Henan Agricultural University, Zhengzhou, China (1)
Department of Clinical Laboratory, National Center for Respiratory Medicine, National Clinical Research Center for Respiratory Disease, State Key Laboratory of Respiratory Disease, Guangzhou Institute of Respiratory Health, The First Affiliated Hospital of Guangzhou Medical University, Guangzhou, Guangdong 510120, China. (1)
Department of Pathology, Beth Israel Deaconess Medical Center, Harvard Medical School (1)
Department of Pharmacodynamics, College of Pharmacy, University of Florida, Gainesville, FL, USA (1)
Department of Pharmacodynamics, University of Florida (1)
Department of Plant Pathology and Microbiology, Texas A&M University (1)
Department of Urology,Sun Yat-sen University Cancer Center,Guangzhou 510060,China (1)
Departments of Cancer Genetics and Epigenetics Beckman Research Institute, City of Hope, Duarte, CA 91007, USA (1)
Guangdong Provincial Key Laboratory of Regional Immunity and Diseases, Shenzhen Key Laboratory of Translational Medicine of Tumor, International Cancer Center, Department of Cell Biology and Genetics, School of Medicine, Shenzhen University, Shenzhen, 518055, China. (1)
Guangxi University (1)
Guangxi University,China (1)
HHubei Academy of Agricultural Sciences, Wuhan, China ubei Academy of Agricultural Sciences, Wuhan, China (1)
Harbmin medical university (1)
Laboratory of Integrative Biology, Guangzhou Institutes of Biomedicine and Health, Chinese Academy of Sciences; Guangzhou, 510530, China. (1)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Science, Xujiaping No.1, Lanzhou, Gansu, 730046 (1)
Life Science and Technology School, Lingnan Normal University, Zhanjiang, Guangdong 524048, PR China (1)
MOE Key Laboratory of Tumor Molecular Biology and State Key Laboratory of Bioactive Molecules and Druggability Assessment, Institute of Life and Health Engineering, College of Life Science and Technology, Jinan University, Guangzhou, China. (1)
Nanchang University (1)
Nurturing Station for the State Key Laboratory of Subtropical Silviculture, Zhejiang A 20 & F University, Dong Hu Campus, 88 Northern Circle Road, Linan 311300, China. (1)

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LGR4 modulates breast cancer initiation, metastasis, and cancer stem cells.

Not available

S-EPMC5901378 | biostudies-literature

Repair of Adult Mammalian Heart After Damages by Oral Intake of Gu Ben Pei Yuan San.

Not available

S-EPMC6541202 | biostudies-literature

Zhu2007_TF_modulated_by_Calcium

This a model from the article: A theoretical study on activation of transcription factor modulated by intracellular Ca2+ oscillations. Zhu CL, Zheng Y, Jia Y Biophys. Chem.[2007 Aug:129(1):49-55 17560007, Abstract: This work presents bo...

2024-09-02 | BIOMD0000000166 | BioModels

Comparative metabolomic analysis of exudates of microcystin-producing and microcystin-free Microcystis aeruginosa strains

Cyanobacterial harmful algal blooms (cHABs) dominated by Microcystis aeruginosa threaten the ecological integrity and beneficial uses of lakes globally. In addition to producing hepatotoxic microcystins (MC), M. aeruginosa exudates (MaE) contain various compounds with demonstrat...

2023-01-16 | MTBLS6603 | MetaboLights

iTRAQ analysis of ClpP mutant treated with methyl gallate

Methyl gallate (MG) is an effective microbicide with great potential usefulness in the integrated management of plant diseases and an important potential drug for clinical application. However, its target remains unknown. This study conducted a transposon sequencing (Tn-seq) under MG treatment in pl...

ORGANISM(S): Ralstonia solanacearum (strain GMI1000) (Pseudomonas solanacearum)

2020-12-10 | PXD021102 | Pride

Therapeutic effect of subcutaneous injection of low dose recombinant human granulocyte-macrophage colony-stimulating factor on pulmonary alveolar proteinosis.

Not available

S-EPMC6941258 | biostudies-literature

Proteomics of human hippocampus

ECM proteins were up-regulated mostly in AD patients

ORGANISM(S): Homo sapiens (Human)

2026-09-14 | PXD072140 | Pride

Brain Hippocampus Alzheimer's disease Human

5×FAD mouse hippocampus ECM proteomics

ECM proteins were up-regulated mostly in both SDS-soluble and SDS-insoluble group of 5×FAD model

ORGANISM(S): Mus musculus (Mouse)

2026-09-14 | PXD072193 | Pride

Mouse Hippocampus Alzheimer's disease

Uncovering small RNA-mediated responses to cold stress in a wheat thermosensitive genic male sterile line by deep sequencing (Degradome-Seq)

The male sterility of thermosensitive genic male sterile (TGMS) lines of wheat (Triticum aestivum) is strictly controlled by temperature. The early phase of anther development is especially susceptible to cold stress. MicroRNAs (miRNA) play an important role in plant development and in responses to ...

ORGANISM(S): Triticum aestivum

2012-04-11 | E-GEOD-37134 | biostudies-arrayexpress

Pulldown of RNA binding protein using SARS CoV 2 NSP1 RNA

RNA sensing is critical for RLR activation and downstream signaling. To identify molecules that are involved in modulating viral RNA recognition, we utilized biotin-labeled 60 nt single-stranded RNA (ssRNA) from SARS-CoV-2 NSP1 coding region (NSP1 ssRNA) to pull down proteins from RAW264.7 cells. Th...

ORGANISM(S): Mus musculus (Mouse)

2026-04-08 | PXD064808 | Pride

Pulldown rna binding protein nsp1 rna sars-cov-2

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