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Unknown (45155)
Proteomics (1114)
Transcriptomics (848)
Metabolomics (202)
Genomics (172)
Multiomics (8)
Other (6)
Models (2)
Genomic (1)

Organisms

Homo sapiens (567)
Mus musculus (301)
Rattus norvegicus (36)
Caenorhabditis elegans (30)
Drosophila melanogaster (27)
Arabidopsis thaliana (22)
Gallus gallus (19)
Danio rerio (17)
Oryza sativa (17)
Saccharomyces cerevisiae (15)
Zea mays (12)
Sus scrofa (12)
Schizosaccharomyces pombe (10)
Bos taurus (10)
Oryza sativa Japonica Group (9)
Ovis aries (7)
Aspergillus niger (4)
uncultured bacterium (4)
Brassica napus (4)
Glycine max (4)
Haloarcula hispanica (3)
Oryza sativa Indica Group (3)
uncultured soil microorganism (2)
activated sludge metagenome (2)
Oryza rufipogon (2)
Actinobacillus pleuropneumoniae serovar 1 str. 4074 (2)
Thermoanaerobacter sp. X514 (2)
environmental samples (2)
Shewanella oneidensis MR-1 (2)
Arachis hypogaea (2)

Organisms

Homo sapiens (7)
Mus musculus (5)
Arabidopsis thaliana (2)
Bacillus sp. HUB-I-004 (1)
Yersinia pestis (1)
Nakaseomyces glabratus (1)
Triticum aestivum (1)
Drosophila melanogaster (1)
Oryza sativa Indica Group (1)
Caenorhabditis elegans (1)
bioreactor sludge metagenome (1)

Repository

biostudies-arrayexpress (952)
pride (736)
iProX (285)
MetaboLights (200)
MassIVE (58)
EGA (39)
PeptideAtlas (26)
ENA (25)
geo (6)
jPOST (4)
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GNPS (2)
NODE (2)
PanoramaPublic (2)
PAXDB (2)
dbGaP (1)

Tissue

Cell culture (187)
Epithelial cell (65)
Liver (38)
Leaf (35)
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Brain (26)
Permanent cell line cell (26)
Others (22)
Root (21)
Blood plasma (19)
Hepatocyte (18)
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Testis (16)
Whole body (15)
Colon (14)
Blood cell (14)
Blood serum (13)
Skin (12)
Blood (11)
Early embryonic cell (11)
Lung (11)
T cell (10)
Macrophage (9)
Primary cell (9)
Cell suspension culture (8)
Embryonic stem cell (8)
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Heart (8)
Male Reproductive System (2)
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Disease

Disease free (25)
Breast cancer (19)
Colon cancer (14)
Prostate adenocarcinoma (11)
Cervix carcinoma (6)
Acute leukemia (5)
Cardiovascular system disease (5)
Hepatocellular carcinoma (5)
Malignant neoplasm of ovary (5)
Wounds and Injuries (5)
Liver cancer (4)
Mixed disorder as reaction to stress (4)
Retinoblastoma (4)
Type 2 diabetes mellitus (4)
Not Available (3)
Brain cancer (3)
COVID-19 (3)
Non-small cell lung carcinoma (3)
Acute T cell leukemia (2)
Alzheimer's disease (2)
Cholangiocarcinoma (2)
Glioblastoma (2)
Head and neck squamous cell carcinoma (2)
Colon cancer metastasis (1)
Hypertensive (1)
VSV infection (1)
Gastric cancer (1)
Prostate cancer (1)
Normal (1)
Colorectal cancer (1)

Technology Type

Mass Spectrometry (736)
Shotgun proteomics (394)
Mass spectrometry (155)
Bottom-up proteomics (97)
Affinity purification coupled with mass spectrometry proteomics (79)
Data-dependent acquisition (61)
Gel-based experiment (55)
Mass spectrometry assay (39)
Top-down proteomics (33)
Data-independent acquisition (23)
SWATH MS (19)
Chemical cross-linking coupled with mass spectrometry proteomics (13)
SRM/MRM (10)
Illumina 15K (8)
Affinity proteomics (8)
All-ion fragmentation (7)
Mass spectrometry imaging (7)
Proteogenomics (7)
NMR spectroscopy (5)
HDMSE (5)
Illumina HiSeq 2000, ILLUMINA (2)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
NMR spectroscopy assay (1)
DiaPASEF (1)
Immunopeptidomics (1)
MSE (1)
Metaproteomics (1)
SomaScan affinity proteomics (1)

Instrument Platform

Illumina HiSeq 2000 (17)
Illumina HiSeq 2500 (15)
Illumina NovaSeq 6000 (14)
HiSeq X Ten (8)
Illumina HiSeq 4000 (3)
Bioanalyzer 2200 (2)
Chromium Controller (2)
Illumina Genome Analyzer IIx (2)
NA (2)
Illumina HiSeq 1000 (2)
Illumina MiSeq (2)
NextSeq 500 (2)
BD FACS Aria II (1)
QIAseqTM miRNA Library Kit (1)
ExoEasy Maxi Kit. (1)
Beckman ultracentrifuge (1)
Illimina TruSeq stranded mRNA kit (1)
Punch biopsy (1)
Computer (1)
FACS (1)
Agilent 2100 bioanalyzer (1)
NanoDrop ND-1000 (1)
Bioanalyzer (1)
Agilent Bioanalyzer (1)
Not applicable (1)
Affymetrix Genechip Command Console software (1)
Trizol Reagent (1)
G2565BA DNA microarray scanner [Agilent] (1)
ScanArray Express HT [PerkinElmer] (1)
GenePix 4000B [Axon Instruments] (1)

Publication Date

2022 (193)
2025 (177)
2023 (156)
2014 (154)
2013 (153)
2024 (147)
2015 (145)
2016 (114)
2021 (108)
2020 (101)
2012 (101)
2011 (97)
2026 (94)
2010 (93)
2019 (89)
2018 (74)
2017 (48)
2008 (42)
2009 (37)
2007 (17)
2005 (7)
2004 (3)
2006 (2)
2003 (1)

UNIPROT ID/AC

1433B_SOYBN (2)
1433D_SOYBN (2)
6DCS_SOYBN (2)
A1YZE0_SOYBN (2)
A5I866_SOYBN (2)
A5JUQ4_SOYBN (2)
A5JVZ7_SOYBN (2)
A5Z2K3_SOYBN (2)
A7BIC9_SOYBN (2)
A7X657_SOYBN (2)
A7XZJ7_SOYBN (2)
A9CPA7_SOYBN (2)
A9QNE4_SOYBN (2)
ACCD_SOYBN (2)
ACT3_SOYBN (2)
AKR1_SOYBN (2)
AMYB_SOYBN (2)
AOX3_SOYBN (2)
ATPB_SOYBN (2)
ATPE_SOYBN (2)
ATPF_SOYBN (2)
B0M195_SOYBN (2)
B0M196_SOYBN (2)
B0M1A0_SOYBN (2)
B0M1A4_SOYBN (2)
B0M1A6_SOYBN (2)
B0M1A9_SOYBN (2)
B0M1B1_SOYBN (2)
B1ACD3_SOYBN (2)
B1ACD5_SOYBN (2)

ENSEMBL ID

ENSG00000170477 (12)
ENSG00000147251 (10)
ENSG00000247315 (5)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:17368 (52)
CHEBI:15741 (49)
CHEBI:16704 (48)
CHEBI:30769 (48)
CHEBI:17568 (47)
CHEBI:17596 (47)
CHEBI:16708 (46)
CHEBI:16750 (45)
CHEBI:7916 (42)
CHEBI:17895 (42)
CHEBI:16335 (41)
CHEBI:17154 (40)
CHEBI:16235 (38)
CHEBI:15891 (38)
CHEBI:16919 (38)
CHEBI:32816 (37)
CHEBI:30915 (37)
CHEBI:16737 (36)
CHEBI:17562 (35)
CHEBI:17821 (35)
CHEBI:16467 (35)
CHEBI:15354 (35)
CHEBI:17748 (34)
CHEBI:17509 (34)
CHEBI:16015 (34)
CHEBI:17295 (34)
CHEBI:17351 (34)
CHEBI:28044 (33)
CHEBI:17015 (33)
CHEBI:16196 (33)

Metabolite Name

Hypoxanthine (54)
Uridine (48)
Uracil (45)
Adenine (43)
Guanosine (43)
Xanthine (41)
Inosine (41)
Creatine (39)
Adenosine (38)
Guanine (38)
L-Tyrosine (38)
Uric acid (36)
Creatinine (35)
Taurine (34)
Citric acid (33)
Riboflavin (33)
Cytidine (33)
Indole (32)
Xanthosine (32)
L-Phenylalanine (32)
L-Valine (31)
L-Arginine (30)
L-Histidine (29)
Choline (29)
Cytosine (29)
Azelaic acid (29)
L-Proline (28)
Succinic acid (28)
Linoleic acid (28)
L-Tryptophan (28)

First Public Date

2014 (5)
2019 (4)
2022 (3)
2018 (3)
2026 (2)
2025 (2)
2024 (1)
2023 (1)
2020 (1)
2017 (1)
2013 (1)
2012 (1)

Modelling Approach

Boolean model (1)
Constraint-based model (1)

Lab affiliation

School of Life Sciences, Central China Normal University, Wuhan, Hubei province, China (14)
USDA-ARS (9)
Peking University (7)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (5)
Cedars-Sinai Medical Center (4)
Greehey Children’s Cancer Research Institute, The University of Texas Health Science Center (4)
Nanjing Agricultural University (4)
State Key Laboratory of Reproductive Medicine, Nanjing Medical University (4)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048 (3)
Huazhong Agricultural University (3)
Institute of Biophysics, Chinese Academy of Sciences (3)
Oak Ridge National Lab (3)
Oak Ridge National Laboratory (3)
Pacific Northwest National Laboratory, USA (3)
SIMM (3)
The Second Hospital of Dalian Medical University (3)
Utrecht University (3)
Wuhan University (3)
Yazhouwan National Laboratory, Sanya 572024, China (3)
wuhan union hospital (3)
Children's Hospital of Nanjing Medical University (2)
China agricultural university, preventive veterinary medicine (2)
College of Agronomy and Biotechnology, China Agricultural University, Beijing, China (2)
College of Agronomy, Qingdao Agricultural University, Qingdao Shandong, China (2)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (2)
College of Life Sciences, Hunan Normal University (2)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (2)
Department of Biochemistry and Department of Metabolic Medicine of the Fourth Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310058, China (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (2)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Classification

fungi (1)
bacteria (1)

Modification

15.994915 (2)
2x(15)N labeled L-lysine (2)
4x(15)N labeled L-arginine (2)
57.021464 (2)
4-tetrahydrothiazine-3-carboxylic acid (1)
42.010565 (1)
58.005479 (1)
Methionine (1)
Not available (1)

Study type

Transcription profiling by array (487)
RNA-seq of coding RNA (169)
ChIP-seq (84)
RNA-seq of non coding RNA (42)
Other (27)
Comparative genomic hybridization by array (26)
Methylation profiling by high throughput sequencing (17)
MicroRNA profiling by array (14)
Methylation profiling by array (13)
RNA-seq of total RNA (12)
Unknown experiment type (10)
ChIP-chip by tiling array (7)
Transcription profiling by SAGE (6)
Transcription profiling by tiling array (4)
ChIP-chip by array (4)
Transcription profiling by RT-PCR (4)
MicroRNA profiling by high throughput sequencing (3)
Single nucleus RNA sequencing (3)
DNA-seq (3)
4C (2)
Proteomic profiling by array (2)
RNA-seq of coding RNA from single cells (2)
Human - High-throughput sequencing (1)
Plant - High-throughput sequencing (1)
Human - One-color microarray (1)
Animal - High-throughput sequencing (1)
Cell line - High-throughput sequencing (1)
RNAi profiling by array (1)
Genotyping by array (1)
CLIP-seq (1)

Release Date

2025 (6783)
2022 (6023)
2023 (5510)
2024 (5438)
2021 (4757)
2020 (3480)
2019 (2578)
2018 (2121)
2017 (1740)
2016 (1573)
2015 (1273)
2026 (1006)
2014 (984)
2013 (667)
2012 (585)
2011 (442)
2010 (345)
2009 (265)
2008 (234)
2007 (90)
2006 (53)
2005 (50)
2004 (33)
2002 (22)
2003 (17)
2000 (12)
2001 (11)
1998 (8)
1997 (4)
1999 (1)

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Deep sequencing of small RNAs from C. elegans during aging

Aging is under genetic control in C. elegans but the mechanisms of lifespan regulation are not completely known. MicroRNAs (miRNAs) regulate various aspects of development and metabolism and one miRNA has been previously implicated in lifespan. Here we show that multiple miRNAs change expression in ...

ORGANISM(S): Caenorhabditis elegans

2011-01-01 | E-GEOD-24510 | biostudies-arrayexpress

Identification of intermediate-sized non-coding RNAs involved in the UV-induced DNA damage response in C. elegans

We utilized high-throughput RNA-seq to uncover the intermediate-sized noncoding RNAs invovled in UV-DNA Damage Responses in C. elegans. 450 novel transfrags were discovered, some of which show dramatic expression change between the UV irradiation and control. This study should lead to a better under...

ORGANISM(S): Caenorhabditis elegans

2012-05-01 | E-GEOD-37063 | biostudies-arrayexpress

Small tRNA-derived RNAs are increased and more abundant than microRNAs in chronic hepatitis B and C

Small, non-coding RNAs control gene expression post-transcriptionally and play important roles in virus-host interactions. Within the liver, the microRNA (miRNA) miR-122 is essential for replication of hepatitis C virus (HCV), while repression of miR-148a by hepatitis B virus (HBV) may enhance tumor...

ORGANISM(S): Homo sapiens

2014-12-18 | E-GEOD-57381 | biostudies-arrayexpress

Ethanol stress response in Desulfovibrio vulgaris

Desulfovibrio vulgaris has been studied extensively for its potential in the bioremediation of heavy metals and radionuclides. Hydrocarbons and solvents, as frequent environmental co-contaminants, have been reported to inhibit microbial activities and thereby pose a limitation on bioremediation effi...

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2010-06-24 | E-GEOD-7489 | biostudies-arrayexpress

Acetone stress response in Desulfovibrio vulgaris

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2009-08-08 | E-GEOD-5569 | biostudies-arrayexpress

Response of Bacillus halodurans C-125 wild-type and OLE-OAP knockout cells to acute ethanol stress

OLE RNA (Ornate, Large, Extremophilic RNA) is a large, noncoding RNA from extremophilic and/or anaerobic Firmicutes that binds to an integral membrane protein (OAP, OLE-Associated Protein) and localizes to the cell membrane. It is highly abundant in cells, and knockouts show increased sensitivity to...

ORGANISM(S): Bacillus halodurans

2012-06-15 | E-GEOD-33303 | biostudies-arrayexpress

Anti-cyclooxygenase, antiglycation and anti-skin aging effect of Dendrobium officinale flowers aqueous extract and its phytochemical validation in aging

The information available in the literature concerning the beneficial effects of Dendrobium officinale flowers on the skin is limited. Therefore, the present study aimed to investigate the in vitro biological potency of its aqueous extract and screen its active components. The a...

2023-03-15 | MTBLS6933 | MetaboLights

Raising girls and boys in early China: Stable isotope data reveal sex differences in weaning and childhood diets during the eastern Zhou era.

Not available

S-EPMC7496748 | biostudies-literature

T-C cell mouse microarray

Small molecules that mimic or inhibit miRNA based mechanisms may readily available treated T-C cell with TB-CF

ORGANISM(S): Mus musculus

2014-08-21 | E-GEOD-60536 | biostudies-arrayexpress

Pyruvate fermentation vs Lactate-Sulfate

In order to obtain a global view of energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough and the proteins involved therein whole-genome microarrays were used to compare the transcriptional response of cells grown with hydrogen/sulfate, pyruvate/sulfate, lactate/thio...

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8015 | biostudies-arrayexpress

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