Zhou H H - OmicsDI

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Unknown (51155)
Proteomics (964)
Transcriptomics (551)
Metabolomics (168)
Genomics (113)
Multiomics (11)
Models (2)
Genomic (2)
Other (2)

Organisms

Homo sapiens (435)
Mus musculus (202)
Caenorhabditis elegans (25)
Rattus norvegicus (25)
Arabidopsis thaliana (24)
Oryza sativa (17)
Drosophila melanogaster (16)
Gallus gallus (13)
Zea mays (11)
Danio rerio (10)
Saccharomyces cerevisiae (10)
Escherichia coli (10)
Oryza sativa Japonica Group (9)
Bos taurus (9)
Aspergillus niger (4)
Sus scrofa (4)
Brassica napus (4)
Solanum lycopersicum (4)
Haloarcula hispanica (3)
Schizosaccharomyces pombe (3)
Thermoanaerobacter sp. X514 (2)
Arachis hypogaea (2)
Oryza sativa Indica Group (2)
Actinobacillus pleuropneumoniae (2)
Clostridioides difficile 630 (1)
Spalax carmeli (1)
Glehnia littoralis (1)
Methanobrevibacter ruminantium (1)
Lonicera japonica (1)
Agaricus bisporus (1)

Organisms

Homo sapiens (4)
Camellia delicata (1)
Camellia longistyla (1)
Camellia mairei var. lapidea (1)
Brassica napus (1)
Caenorhabditis elegans (1)
Oryza sativa (1)
Arabidopsis thaliana (1)
Cucumis sativus (1)
Mus musculus (1)

Repository

biostudies-arrayexpress (608)
pride (583)
iProX (309)
MetaboLights (166)
MassIVE (38)
EGA (37)
PeptideAtlas (23)
ENA (15)
geo (6)
jPOST (5)
LINCS (4)
PAXDB (3)
BioModels (2)
dbGaP (2)
GNPS (2)
PanoramaPublic (2)
GPMDB (1)

Tissue

Cell culture (153)
Epithelial cell (45)
Liver (30)
Brain (24)
Whole body (23)
Others (22)
Leaf (22)
Plant cell (21)
Root (19)
Kidney (16)
Permanent cell line cell (15)
Blood plasma (14)
Hepatocyte (14)
Blood cell (13)
Blood serum (12)
Blood (11)
Testis (11)
Heart (9)
Lung (9)
Colon (8)
Early embryonic cell (8)
Embryonic stem cell (8)
T cell (8)
Fibroblast (7)
Skin (7)
Stem cell (7)
Cell suspension culture (6)
HeLa cell (6)
Macrophage (6)
Primary cell (6)

Disease

Disease free (17)
Breast cancer (14)
Colon cancer (8)
Cervix carcinoma (7)
Acute leukemia (6)
Cardiovascular system disease (6)
Prostate adenocarcinoma (5)
Hepatocellular carcinoma (4)
Liver cancer (4)
Mixed disorder as reaction to stress (4)
Type 2 diabetes mellitus (4)
Alzheimer's disease (3)
COVID-19 (3)
Non-small cell lung carcinoma (3)
Acute T cell leukemia (2)
Hepatitis B (2)
Liver disease (2)
Malignant neoplasm of ovary (2)
Stomach cancer (2)
Wounds and Injuries (2)
Hypertensive (1)
VSV infection (1)
Gastric cancer (1)
Central nervous system cancer (1)
Normal (1)
Not Available (1)
Alcohol (1)
Anthrax disease (1)
Bacterial infectious disease (1)
Bladder transitional cell carcinoma (1)

Technology Type

Mass Spectrometry (583)
Shotgun proteomics (323)
Mass spectrometry (139)
Bottom-up proteomics (69)
Affinity purification coupled with mass spectrometry proteomics (61)
Data-dependent acquisition (47)
Gel-based experiment (45)
Mass spectrometry assay (22)
Top-down proteomics (22)
Data-independent acquisition (14)
SWATH MS (14)
Illumina 15K (8)
Affinity proteomics (8)
Chemical cross-linking coupled with mass spectrometry proteomics (7)
Proteogenomics (7)
All-ion fragmentation (6)
Mass spectrometry imaging (6)
SRM/MRM (5)
NMR spectroscopy (4)
HDMSE (4)
Illumina HiSeq 2000, ILLUMINA (2)
Chemiluminescence (2)
ELISA (2)
Fluorescence imaging (2)
Fluorescence intensity (2)
Illumina HiSeq 2000, Illumina Infinium HumanMethylation450 BeadChip, Affymetrix expression array, ILLUMINA (1)
Illumina 1.2M, Affymetrix 6.0, Affymetrix 6.0 - CHIAMO (1)
NMR spectroscopy assay (1)
DiaPASEF (1)
Immunopeptidomics (1)

Instrument Platform

LTQ Orbitrap Velos (21)
Q Exactive (10)
Orbitrap Fusion Lumos (8)
Illumina HiSeq 2000 (7)
LTQ Orbitrap Elite (6)
HiSeq X Ten (5)
Illumina HiSeq 2500 (5)
Illumina NovaSeq 6000 (4)
TripleTOF 5600 (AB Sciex) (3)
Orbitrap Eclipse (3)
Orbitrap Exploris 480 (3)
Q Exactive HF (3)
LTQ Orbitrap (3)
Q Exactive Plus (2)
FACS (1)
Affymetrix Genechip Command Console software (1)
Trizol Reagent (1)
Illumina Genome Analyzer IIx (1)
Axon- GenePix4000B (1)
ScanArray Express HT [PerkinElmer] (1)
GenePix 4000B [Axon Instruments] (1)
Ion Torrent PGM (1)
Illumina HiSeq 4000 (1)
NextSeq 500 (1)
Instrument (1)
6550 iFunnel Q-TOF LC/MS (1)
Agilent 6495B QQQ mass spectrometer (1)
Agilent 8890 GC-MS (1)
Exactive Plus (1)
In-house built IMS-MS with Agilent 6538 QTOF MS (1)

Publication Date

2022 (167)
2025 (148)
2023 (143)
2024 (114)
2013 (105)
2020 (94)
2014 (92)
2015 (91)
2021 (85)
2012 (71)
2019 (70)
2011 (67)
2016 (64)
2010 (64)
2026 (61)
2018 (56)
2017 (45)
2008 (35)
2009 (30)
2007 (12)
2005 (6)
2006 (1)
2004 (1)
2003 (1)

UNIPROT ID/AC

1433B_SOYBN (2)
1433D_SOYBN (2)
6DCS_SOYBN (2)
A1YZE0_SOYBN (2)
A5I866_SOYBN (2)
A5JUQ4_SOYBN (2)
A5JVZ7_SOYBN (2)
A5Z2K3_SOYBN (2)
A7BIC9_SOYBN (2)
A7X657_SOYBN (2)
A7XZJ7_SOYBN (2)
A9CPA7_SOYBN (2)
A9QNE4_SOYBN (2)
ACCD_SOYBN (2)
ACT3_SOYBN (2)
AKR1_SOYBN (2)
AMYB_SOYBN (2)
AOX3_SOYBN (2)
ATPB_SOYBN (2)
ATPE_SOYBN (2)
ATPF_SOYBN (2)
B0M195_SOYBN (2)
B0M196_SOYBN (2)
B0M1A0_SOYBN (2)
B0M1A4_SOYBN (2)
B0M1A6_SOYBN (2)
B0M1A9_SOYBN (2)
B0M1B1_SOYBN (2)
B1ACD3_SOYBN (2)
B1ACD5_SOYBN (2)

ENSEMBL ID

ENSG00000147251 (9)
ENSG00000170477 (9)
ENSG00000247315 (3)

CHEBI ID

CHEBI:17368 (49)
CHEBI:30769 (46)
CHEBI:16704 (45)
CHEBI:17596 (45)
CHEBI:16708 (44)
CHEBI:15741 (44)
CHEBI:17568 (44)
CHEBI:16750 (43)
CHEBI:7916 (39)
CHEBI:17154 (38)
CHEBI:16335 (38)
CHEBI:17895 (38)
CHEBI:16235 (36)
CHEBI:15891 (36)
CHEBI:32816 (35)
CHEBI:30915 (35)
CHEBI:16919 (35)
CHEBI:16737 (34)
CHEBI:15354 (34)
CHEBI:28044 (33)
CHEBI:17821 (33)
CHEBI:16467 (33)
CHEBI:17562 (32)
CHEBI:17748 (32)
CHEBI:17509 (32)
CHEBI:17351 (32)
CHEBI:16450 (31)
CHEBI:16040 (31)
CHEBI:17203 (31)
CHEBI:16359 (31)

Metabolite Name

Hypoxanthine (42)
Uridine (40)
Uracil (35)
Adenine (34)
Inosine (33)
Xanthine (31)
Guanosine (29)
Creatinine (29)
Taurine (28)
Uric acid (28)
Creatine (28)
Adenosine (27)
Guanine (27)
Citric acid (25)
L-Tyrosine (25)
Xanthosine (24)
Riboflavin (24)
Oleic acid (24)
Linoleic acid (24)
Cytidine (23)
L-Valine (23)
L-Arginine (22)
Pantothenic acid (22)
Cholic acid (22)
Palmitic acid (21)
Azelaic acid (21)
Thymine (20)
L-Proline (20)
Benzoic acid (20)
Choline (20)

First Public Date

2018 (4)
2024 (2)
2023 (2)
2022 (2)
2014 (2)
2017 (1)
2016 (1)
2013 (1)

Modelling Approach

Boolean model (1)
Constraint-based model (1)

Lab affiliation

School of Life Sciences, Central China Normal University, Wuhan, Hubei province, China (14)
USDA-ARS (9)
Key Lab of Integrated Crop Pest Management of Shandong, College of Plant Health and Medicine, Qingdao Agricultural University, Qingdao, China (8)
Shanghai Institute of Materia Medica, Chinese Academy of Sciences (5)
College of Chemistry and Molecular Engineering, Peking University, Beijing, China. (4)
Peking University (4)
SIMM (4)
Zhejiang University (4)
Nanjing Agricultural University (3)
Shandong Normal University (3)
Utrecht University (3)
Yazhouwan National Laboratory, Sanya 572024, China (3)
wuhan union hospital (3)
Cedars-Sinai Medical Center (2)
Children's Hospital of Nanjing Medical University (2)
China Pharmaceutical University (2)
China agricultural university, preventive veterinary medicine (2)
College of Agronomy and Biotechnology, China Agricultural University, Beijing, China (2)
College of Agronomy, Qingdao Agricultural University, Qingdao Shandong, China (2)
College of Life Sciences, Hunan Normal University (2)
Crops Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, China. (2)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences (2)
Department of Analytical Chemistry and CAS Key Laboratory of Receptor Research, Shanghai Institute of Materia Medica, Chinese Academy of Sciences, Shanghai, China (2)
Department of Biochemistry and Department of Metabolic Medicine of the Fourth Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou 310058, China (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Department of Immunobiology, College of Life Science and Technology, Jinan University, Guangzhou, China. (2)
Department of Laboratory Medicine, West China Hospital, Sichuan University, Chengdu 610041, China. (2)
Department of Medicine, Columbia University Irving Medical Center (2)
Department of Molecular Pharmacology and Therapeutics Columbia University Irving Medical Center (2)
Department of Radiation and Medical Oncology, Zhongnan Hospital of Wuhan University (2)

IsPrivate

False (2)

Model Flag

Non Kinetic (1)

Modification

15.994915 (1)
2x(15)N labeled L-lysine (1)
4-tetrahydrothiazine-3-carboxylic acid (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)
6x(2)H labeled dimethylated L-arginine (1)
Not available (1)

Study type

Transcription profiling by array (325)
RNA-seq of coding RNA (113)
ChIP-seq (51)
RNA-seq of non coding RNA (29)
Other (18)
MicroRNA profiling by array (11)
Unknown experiment type (10)
Methylation profiling by high throughput sequencing (8)
Methylation profiling by array (6)
Comparative genomic hybridization by array (5)
Transcription profiling by SAGE (4)
ChIP-chip by tiling array (4)
RNA-seq of total RNA (4)
Transcription profiling by RT-PCR (3)
Transcription profiling by tiling array (2)
4C (2)
Proteomic profiling by array (2)
Plant - High-throughput sequencing (1)
Human - One-color microarray (1)
Animal - High-throughput sequencing (1)
RNAi profiling by array (1)
ChIP-chip by array (1)
Genotyping by array (1)
MicroRNA profiling by high throughput sequencing (1)
Spatial transcriptomics by high-throughput sequencing (1)
ATAC-seq (1)
Single nucleus RNA sequencing (1)
DNA-seq (1)

Release Date

2025 (8008)
2022 (6942)
2023 (6297)
2024 (6277)
2021 (5385)
2020 (3820)
2019 (2827)
2018 (2392)
2017 (1979)
2016 (1581)
2015 (1294)
2026 (1119)
2014 (1027)
2013 (668)
2012 (581)
2011 (441)
2010 (327)
2009 (278)
2008 (228)
2007 (95)
2006 (54)
2005 (47)
2004 (35)
2002 (21)
2003 (13)
2001 (10)
2000 (8)
1997 (4)
1999 (1)
1998 (1)

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H-NS LC-MS/MS of Edwardsiella piscicida

This study aims to investigate lysine acetylation sites on the H-NS protein in Edwardsiella piscicida. The H-NS protein was first purified, then subjected to SDS-PAGE, followed by gel band excision and LC-MS/MS identification.

ORGANISM(S): Edwardsiella tarda EIB202

2024-05-24 | PXD047152 | Pride

Camellia longistyla isolate:Camellia longistyla Chang ex F. A. Zeng et H. Zhou

Camellia longistyla isolate:Camellia longistyla Chang ex F. A. Zeng et H. Zhou Genome sequencing

PRJNA399244 | ENA

Global Proteomic Analysis of Lysine Crotonylation in H. axyridis

Lysine crotonylation (Kcr), a recently discovered post-translational modification, plays a key role in the regulation of diverse cellular processes.. However, the functions of Kcr are unknown in H. axyridis .

ORGANISM(S): Harmonia axyridis

2021-09-28 | PXD024421 | Pride

Lysine crotonylation Ptm H. axyridis

Acetone stress response in Desulfovibrio vulgaris

Desulfovibrio vulgaris has been studied extensively for its potential in the bioremediation of heavy metals and radionuclides. Hydrocarbons and solvents, as frequent environmental co-contaminants, have been reported to inhibit microbial activities and thereby pose a limitation on bioremediation effi...

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2009-08-08 | E-GEOD-5569 | biostudies-arrayexpress

Hydrogen vs Lactate as electron donor in Sulfate reduction

In order to obtain a global view of energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough and the proteins involved therein whole-genome microarrays were used to compare the transcriptional response of cells grown with hydrogen/sulfate, pyruvate/sulfate, lactate/thio...

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8037 | biostudies-arrayexpress

Hydrogen peroxide Stress in Desulfovibrio vulgaris Hildenborough (REPLACED BY GSE21441)

Using data from microarray experiments, we investigated the effects of excess hydrogen peroxide on D. vulgaris. Keywords: stress response, time course Comparison of wild type and deletion mutant cells treated with 1 mM H2O2 to untreated cells at times of 0 and 120 min. See also Series GSE4447 (http...

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2011-10-03 | E-GEOD-14345 | biostudies-arrayexpress

Hydrogen peroxide Stress in Desulfovibrio vulgaris Hildenborough (REPLACED BY GSE21438)

ORGANISM(S): Desulfovibrio vulgaris str. Hildenborough

2011-10-03 | E-GEOD-14355 | biostudies-arrayexpress

Pyruvate vs Lactate as electron donor in Sulfate reduction

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8071 | biostudies-arrayexpress

Thiosulfate vs Sulfate as electron acceptor in Sulfate reduction

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-05-31 | E-GEOD-8072 | biostudies-arrayexpress

Energy metabolism pathways of the sulfate-reducer Desulfovibrio vulgaris Hildenborough

This SuperSeries is composed of the following subset Series: GSE8015: Pyruvate fermentation vs Lactate-Sulfate GSE8037: Hydrogen vs Lactate as electron donor in Sulfate reduction GSE8071: Pyruvate vs Lactate as electron donor in Sulfate reduction GSE8072: Thiosulfate vs Sulfate as electron acceptor ...

ORGANISM(S): Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

2008-04-05 | E-GEOD-8069 | biostudies-arrayexpress

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