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GenomicsChryseobacterium marse PTM-20240506
Chryseobacterium marse PTM-20240506 genome sequencing
PRJNA1224932 | ENA
GenomicsProteo-Genomic Characterization and Mapping of Nucleosomes Decoded by Brd and HP1 Proteins (Chip-Seq data)
Background: Histone post-translational modifications (PTMs) constitute a branch of epigenetic mechanisms that can control the expression of eukaryotic genes in a heritable manner. Recent studies have identified several PTM-binding proteins containing diverse specialized domains whose recognition of ...
ORGANISM(S): Homo sapiens 
2012-07-31 | E-GEOD-39579 | biostudies-arrayexpress
ProteomicsQuantitative profiling of STOichiometry by Resolvable Mass tags
Post-translational modifications (PTMs) play important roles in modulating biological functions of proteins. Stoichiometry, which quantifies the modification percentage, is a critical factor for any given PTM. In this work, we developed a chemoproteomic strategy called “STO-MS” to systematically qua...
ORGANISM(S): Homo Sapiens 
PXD056632 |
ProteomicsFAIMS enhances the detection of PTM crosstalk sites
Protein post-translational modification (PTMs) enable cells to rapidly change in response to biological stimuli. With over 400 PTMs, understanding these control mechanisms is complex. To date, efforts have focused on investigating the effect of single PTMs on protein function. Yet, many proteins con...
ORGANISM(S): Homo sapiens (Human) 
2025-03-11 | PXD026448 | Pride
Faims Lc-ms Post-translational modifications Interplay Crosstalk 
UnknownPTM-Mamba: a PTM-aware protein language model with bidirectional gated Mamba blocks.
Not available
S-EPMC12074982 | biostudies-literature
ProteomicsQuantitative Analysis of Global Proteome in human cell line
In total, 5,829 protein groups were identified, among which 4,470 proteins were quantified. The fold-change cutoff was set when proteins with quantitative ratios above 1.3 or below 0.77 are deemed significant. Among the quantified proteins, 12 proteins are up-regulated and 116 proteins are down-regu...
ORGANISM(S): Homo sapiens (Human) 
2018-10-24 | PXD006386 | Pride
Q-exactive Human Proteome 
UnknownPTM-Mamba: A PTM-Aware Protein Language Model with Bidirectional Gated Mamba Blocks.
Not available
S-EPMC10925343 | biostudies-literature
Genomics
Ptt and Ptm population
PRJNA725945 | ENA
Genomics
Transcriptome of iPSC-TM and pTM
PRJNA1098785 | ENA
ProteomicsQuantitative PTM Maps of Human Pathologic Tau Identify Patient Heterogeneity and Define Critical Steps in Alzheimer’s Disease Progression - angular gyrus
To elucidate the role of Tau isoforms and PTM stoichiometry in Alzheimer’s disease (AD), we generated a high resolution quantitative proteomic map of 88 PTMs on multiple isoforms of Tau isolated from the post-mortem human tissue from 49 AD and 42 control subjects. While Tau PTM maps reveal heterogen...
ORGANISM(S): Homo Sapiens (ncbitaxon:9606) 
2021-11-18 | MSV000088406 | MassIVE
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