Zhou Yang Y - OmicsDI

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Unknown (18034)
Proteomics (341)
Transcriptomics (83)
Metabolomics (46)
Genomics (15)
Multiomics (4)
Other (2)

Organisms

Homo sapiens (125)
Mus musculus (56)
Zea mays (6)
Drosophila melanogaster (5)
Danio rerio (4)
Ovis aries (4)
Arabidopsis thaliana (3)
Oryza sativa (3)
Gallus gallus (2)
Macaca mulatta (2)
Nannospalax galili (1)
Acromyrmex echinatior (1)
Pteropus alecto (1)
Oryza rufipogon (1)
Haloferax mediterranei (1)
Bos grunniens (1)
Brassica oleracea (1)
Deinococcus gobiensis (1)
Tomato yellow leaf curl China virus (1)
Manihot esculenta (1)
Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (1)
Shewanella oneidensis MR-1 (1)
Arachis hypogaea (1)
Solanum habrochaites (1)
Bemisia tabaci (1)
Gossypium hirsutum (1)
Bombyx mori (1)
Neurospora crassa (1)
Yersinia pestis (1)
Oryza sativa Indica Group (1)

Organisms

Yersinia pestis (1)
Homo sapiens (1)

Repository

pride (175)
iProX (149)
biostudies-arrayexpress (87)
MetaboLights (46)
MassIVE (10)
EGA (8)
PeptideAtlas (6)
ENA (2)
geo (1)
GPMDB (1)
jPOST (1)
PAXDB (1)

Tissue

Cell culture (40)
Epithelial cell (22)
Liver (15)
Brain (9)
Plant cell (8)
Blood cell (6)
Leaf (6)
Root (6)
Blood plasma (5)
Blood serum (5)
Heart (5)
Hepatocyte (5)
Kidney (5)
Primary cell (5)
Stem cell (5)
Permanent cell line cell (4)
Testis (4)
Whole body (4)
Others (3)
Blood (3)
Bone marrow (3)
Colon (3)
Lung (3)
Male Reproductive System (2)
Cell suspension culture (2)
Early embryonic cell (2)
Embryo (2)
Embryonic stem cell (2)
Gastric adenocarcinoma cell (2)
HCT-116 cell (2)

Disease

Prostate adenocarcinoma (9)
Disease free (7)
Colon cancer (6)
Acute leukemia (4)
Breast cancer (3)
Hepatocellular carcinoma (3)
Alzheimer's disease (2)
Cardiovascular system disease (2)
Liver cancer (2)
Type 2 diabetes mellitus (2)
Not Available (1)
Bladder transitional cell carcinoma (1)
Cervix carcinoma (1)
Chronic myeloid leukemia (1)
Chronic obstructive pulmonary disease (1)
Gastric adenocarcinoma (1)
Head and neck squamous cell carcinoma (1)
Malignant neoplasm of ovary (1)
Mixed disorder as reaction to stress (1)
Multiple myeloma (1)
Pancreatic cancer (1)
Pre-eclampsia (1)
Primary ovarian insufficiency (1)
Prion disease (1)
Severe acute respiratory syndrome (1)
Skin cancer (1)
Stomach carcinoma (1)
Uveitis (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (175)
Shotgun proteomics (97)
Mass spectrometry (41)
Bottom-up proteomics (21)
Affinity purification coupled with mass spectrometry proteomics (18)
Data-dependent acquisition (18)
Top-down proteomics (12)
Gel-based experiment (11)
SWATH MS (6)
Mass spectrometry assay (5)
Data-independent acquisition (5)
Illumina HiSeq 2000, ILLUMINA (2)
Proteogenomics (2)
Affinity proteomics (1)
All-ion fragmentation (1)
Chemical cross-linking coupled with mass spectrometry proteomics (1)
Mass spectrometry imaging (1)

Instrument Platform

Liquid Chromatography MS - positive - reverse phase (22)
Liquid Chromatography MS - negative - reverse phase (19)
LTQ Orbitrap Velos (5)
Liquid Chromatography MS - negative - hilic (5)
Liquid Chromatography MS - positive - hilic (5)
Q Exactive (4)
Liquid Chromatography MS - negative - reverse-phase (4)
Liquid Chromatography MS - (3)
Liquid Chromatography MS - negative (3)
Liquid Chromatography MS - positive (3)
Liquid Chromatography MS - positive - reverse-phase (3)
HiSeq X Ten (2)
LTQ Orbitrap (2)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (2)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - alternating - hilic (2)
Liquid Chromatography MS - alternating - reverse phase (2)
Illumina HiSeq 2500 (1)
Illumina HiSeq 2000 (1)
Instrument (1)
Orbitrap Elite mass spectrometer(Thermo) (1)
Q Exactive HF (1)
Q Exactive HF-X (1)
Liquid Chromatography MS - negative – rp (1)
Liquid Chromatography MS - positive – rp (1)
Ultra-High Performance Liquid Chromatography-Q Exactive Plus MS&MS/MS-Negative(UHPLC-MS&MS/MS(Negative))(Thermo Scientific) (1)
Ultra-High Performance Liquid Chromatography - Time Of Flight MS - Negative (UPLC-TOF MS(Negative)) (Waters) (1)
Liquid Chromatography MS – negative - reverse phase (1)
6530 Q-TOF LC/MS (Agilent) (1)
Gas Chromatography MS - (1)

Publication Date

2023 (60)
2022 (47)
2024 (42)
2025 (38)
2014 (30)
2021 (29)
2020 (28)
2026 (23)
2019 (22)
2015 (15)
2016 (14)
2018 (14)
2013 (13)
2017 (11)
2012 (9)
2010 (9)
2011 (8)
2009 (5)

UNIPROT ID/AC

3BHS1_MACMU (1)
9544.ENSMMUP00000000029 (1)
9544.ENSMMUP00000000072 (1)
9544.ENSMMUP00000000075 (1)
9544.ENSMMUP00000000192 (1)
9544.ENSMMUP00000000231 (1)
9544.ENSMMUP00000000270 (1)
9544.ENSMMUP00000000273 (1)
9544.ENSMMUP00000000300 (1)
9544.ENSMMUP00000000331 (1)
9544.ENSMMUP00000000335 (1)
9544.ENSMMUP00000000399 (1)
9544.ENSMMUP00000000400 (1)
9544.ENSMMUP00000000529 (1)
9544.ENSMMUP00000000584 (1)
9544.ENSMMUP00000000645 (1)
9544.ENSMMUP00000000701 (1)
9544.ENSMMUP00000000740 (1)
9544.ENSMMUP00000000788 (1)
9544.ENSMMUP00000000800 (1)
9544.ENSMMUP00000000801 (1)
9544.ENSMMUP00000000832 (1)
9544.ENSMMUP00000000870 (1)
9544.ENSMMUP00000000898 (1)
9544.ENSMMUP00000000905 (1)
9544.ENSMMUP00000000981 (1)
9544.ENSMMUP00000001028 (1)
9544.ENSMMUP00000001049 (1)
9544.ENSMMUP00000001078 (1)
9544.ENSMMUP00000001171 (1)

ENSEMBL ID

ENSG00000170477 (5)
ENSG00000247315 (5)
ENSG00000147251 (4)
ENSG00000214897 (2)
ENSG00000229353 (2)
ENSG00000204131 (1)

CHEBI ID

CHEBI:16708 (20)
CHEBI:16704 (20)
CHEBI:17368 (20)
CHEBI:16750 (19)
CHEBI:17568 (19)
CHEBI:16335 (18)
CHEBI:7916 (18)
CHEBI:17154 (16)
CHEBI:15354 (16)
CHEBI:17895 (16)
CHEBI:17596 (16)
CHEBI:30769 (16)
CHEBI:17748 (15)
CHEBI:15741 (15)
CHEBI:17509 (15)
CHEBI:17750 (15)
CHEBI:16359 (15)
CHEBI:16027 (15)
CHEBI:30915 (15)
CHEBI:16737 (15)
CHEBI:16919 (15)
CHEBI:17821 (14)
CHEBI:16235 (14)
CHEBI:16467 (14)
CHEBI:17203 (14)
CHEBI:15891 (14)
CHEBI:32816 (14)
CHEBI:15756 (14)
CHEBI:17351 (14)
CHEBI:18344 (14)

Metabolite Name

Hypoxanthine (14)
Uracil (13)
Adenosine (13)
Guanosine (13)
Adenine (12)
Cholic acid (11)
Uridine (11)
Creatinine (11)
Uric acid (10)
Xanthine (10)
Inosine (10)
Thymine (9)
Pantothenic acid (9)
Taurine (9)
Citric acid (9)
Guanine (9)
Palmitic acid (9)
Oleic acid (9)
Thymidine (9)
Ornithine (8)
Indole (8)
Sphinganine (8)
Riboflavin (8)
Cytidine (8)
Creatine (8)
Sphingosine (7)
4-Pyridoxic acid (7)
Kynurenic acid (7)
Pyridoxamine (7)
Choline (7)

First Public Date

2022 (1)
2014 (1)

Classification

bacteria (1)

Modification

15.994915 (1)
2x(15)N labeled L-lysine (1)
4x(15)N labeled L-arginine (1)
57.021464 (1)

Study type

RNA-seq of coding RNA (37)
Transcription profiling by array (27)
RNA-seq of non coding RNA (9)
Other (4)
Transcription profiling by RT-PCR (3)
ChIP-seq (3)
Methylation profiling by high throughput sequencing (2)
Comparative genomic hybridization by array (1)
Methylation profiling by array (1)

Release Date

2025 (2991)
2022 (2498)
2024 (2339)
2023 (2335)
2021 (1929)
2020 (1387)
2019 (943)
2018 (788)
2017 (605)
2016 (544)
2026 (466)
2015 (394)
2014 (340)
2013 (196)
2012 (127)
2011 (72)
2010 (57)
2009 (43)
2008 (27)
2007 (12)
2006 (8)
2004 (8)
2005 (5)
2003 (3)
2000 (2)
2002 (1)
2001 (1)

Lab affiliation

USDA-ARS (7)
Cedars-Sinai Medical Center (4)
Departments of Surgery and Biomedical Sciences Cedars-Sinai Medical Center Los Angeles, CA 90048 (3)
wuhan union hospital (3)
Children's Hospital of Nanjing Medical University (2)
China agricultural university, preventive veterinary medicine (2)
Department of Biochemistry and Structural Biology and Center for Innovative Drug Discovery School of Medicine, University of Texas Health Science Center at San Antonio, 7703 Floyd Curl Drive, San Antonio, TX 78229, United States (2)
Department of Hematology, Tongji Hospital, Frontier Science Center for Stem Cell Research, Shanghai Key Laboratory of Signaling and Disease Research, School of Life Sciences and Technology, Tongji University, Shanghai, 200092, China (2)
Department of Radiation and Medical Oncology, Zhongnan Hospital of Wuhan University (2)
Institute of Biophysics, Chinese Academy of Sciences (2)
Peking University (2)
Robert W. Holley Center for Agriculture and Health United States Department of Agriculture Agricultural Research Service (2)
State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Guangdong Key Laboratory of Nasopharyngeal Carcinoma Diagnosis and Therapy, Sun Yat-sen University Cancer Center, Guangzhou 510060, China (2)
The First Affiliated Hospital, School of Medicine, Zhejiang University (2)
westlake.edu.cn (2)
1 Department of General Surgery, The 306th Hospital of PLA-Peking University Teaching Hospital, Beijing 100101, China 2 Department of General Surgery, Strategic Support Force Medical Center, Beijing 100101, China (1)
1. Department of Pharmacology (National Key Laboratory of Frigid Zone Cardiovascular Disease, Key Laboratory of Cardiovascular Research, Ministry of Education), College of Pharmacy, Harbin Medical University (1)
Army Medical University (Third Military Medical University) (1)
Associate Professor, Cedars-Sinai Medical Center, Surgery (1)
BGI-Shenzhen (1)
BGI-Shenzhen,China (1)
BGI-shenzhen (1)
Bioheat and mass transfer laboratory, Med-X Research Institute, Shanghai Jiao Tong University (1)
Biotechnology Research Institute, Chinese Academy of Agricultural Sciences, Beijing 100081, China (1)
CAS Key Laboratory of Separation Sciences for Analytical Chemistry, Dalian Institute of Chemical Physics, Chinese Academy of Sciences, Dalian 116023, China (1)
Center for Kidney Disease, 2nd Affiliated Hospital, Nanjing Medical University, Nanjing, Jiangsu 210003, China (1)
Centre for Membrane Interactions and Dynamics, Department of Biomedical Science, University of Sheffield, Sheffield (1)
Children's Hospital, Zhejiang University School of Medicine, National Clinical Research Center for Child Health, Hangzhou, Zhejiang 310052, China (1)
China National GenBank,BGI-Shenzhen,Shenzhen 518120,China (1)
China Pharmaceutical University (1)

Tags

xref:PubMed:21345178 (1)
pathogen (1)
pathogen:bacterium (1)

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Phenotypic and transcriptional analysis of the osmotic regulator OmpR in Yersinia pestis

Background The osmotic regulator OmpR in Escherichia coli regulates differentially the expression of major porin proteins OmpF and OmpC. In Yersinia enterocolitica and Y. pseudotuberculosis, OmpR is required for both virulence and survival within macrophages. However, the phenotypic and regulatory r...

ORGANISM(S): Yersinia pestis

2011-10-23 | E-GEOD-26601 | biostudies-arrayexpress

Genome-wide survey of YY1 targets in C2C12 cells by High-throughput sequencing

By applying ChIP-seq, we generated genome-wide maps of YY1 in skeletal myoblasts and myotubes. We found that YY1 binds to 1820 confident target with a large portion residing in the intergenic regions. In addition, YY1 was found to activate many loci, and there is no significant overlap between YY1 a...

ORGANISM(S): Mus musculus

2013-08-15 | E-GEOD-45875 | biostudies-arrayexpress

Alterations in the gene expression profile in SKOV3 cells exposed to elaiophylin

Elaiophylin was screened and identified as a novel autophagy inhibitor, with significant antitumor efficacy as a single agent. To explore the mechanisms by which elaiophylin kills cancer cells, NimbleGen 12x135K microarrays were used to find the gene expression changes in SKOV3 cells treated with el...

ORGANISM(S): Homo sapiens

2022-06-07 | GSE205529 | GEO

Symbiotic bacteria-derived organic acids protect Delia antiqua larvae from entomopathogenic fungal infection

The protection of associated microbiota for their animal hosts against pathogen infection has been studied widely over the last 100 years. However, how those microbes protect the animal host is limitedly investigated. In former studies, body surface microbes of one insect, Delia antiqua,...

2020-11-12 | MTBLS2074 | MetaboLights

Differentially expressed proteins between WT Y. pestis and ΔhmwC

ORGANISM(S): Yersinia Pestis Co92

PXD042928 |

Self-derived structure-disrupting peptides targeting methionine aminopeptidase in pathogenic bacteria: a new strategy to generate antimicrobial peptides.

Not available

S-EPMC6338635 | biostudies-literature

Frontoparietal paired associative stimulation versus single-site stimulation for generalized anxiety disorder: a pilot rTMS study.

Not available

S-EPMC9259432 | biostudies-literature

Facilitation of MrgprD by TRP-A1 promotes neuropathic pain.

Not available

S-EPMC6988841 | biostudies-literature

Myeloid PFKFB3-mediated glycolysis promotes kidney fibrosis

Excessive renal fibrosis is a common pathology in progressive chronic kidney diseases. Inflammatory injury and aberrant repair processes contribute to the development of kidney fibrosis. Myeloid cells, particularly monocytes/macrophages, play a crucial role in kidney fibrosis by releasing their proi...

2024-03-12 | MTBLS8278 | MetaboLights

Complete mitochondrial genome of Morphostenophanes yunnanus (Zhou, 2020) (Insecta: Coleoptera: Tenebrionidae) and phylogenetic analysis.

Not available

S-EPMC9318264 | biostudies-literature

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18521 Results

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