Zhu Yuan Y - OmicsDI

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Unknown (3079)
Proteomics (107)
Transcriptomics (33)
Metabolomics (16)
Genomics (6)
Models (1)

Organisms

Homo sapiens (56)
Bombyx mori (44)
Onchocerca volvulus (44)
Klebsiella pneumoniae (44)
Musca domestica (44)
Brugia malayi (44)
Schizosaccharomyces pombe (44)
Cnidaria (44)
Streptomyces coelicolor A3(2) (44)
Sus scrofa (44)
Human immunodeficiency virus 1 (44)
Oryza sativa Indica Group (44)
Sinorhizobium meliloti BL225C (44)
Vitis (44)
Sus scrofa domesticus (44)
Ostreococcus tauri (44)
Saccharomyces cerevisiae (44)
Mus musculus (22)
Rattus norvegicus (7)
Danio rerio (5)
Oryza sativa (2)
Rattus rattus (2)
Escherichia coli (2)
cellular organisms (1)
Mycobacterium tuberculosis (1)
Populus trichocarpa (1)
Bubalus bubalis (1)
Drosophila melanogaster (1)
Arabidopsis thaliana (1)
Staphylococcus aureus (1)

Repository

iProX (49)
pride (44)
biostudies-arrayexpress (34)
MetaboLights (16)
PeptideAtlas (11)
EGA (5)
MassIVE (3)
BioModels (1)

Tissue

Cell culture (15)
Plasma Non-glyco (11)
Brain (4)
Permanent cell line cell (3)
Blood cell (3)
Leaf (3)
CNS neuron (sensu Vertebrata) (2)
Fibroblast (2)
Blood serum (2)
Plant cell (2)
Stem cell (2)
Blood plasma (2)
Macrophage (2)
Hepatocyte (2)
Short term hematopoietic stem cell (1)
White fat cell (1)
Neoplastic cell (1)
Thallus (1)
Hair follicle dermal papilla cell (1)
Kidney cell (1)
HEK-293T cell (1)
Primary cell (1)
Erythrocyte (1)
Malignant cell (1)
Seed (1)
Blood (1)
Cerebrospinal fluid (1)
Cell suspension culture (1)
Stomach (1)
Lung (1)

Disease

Autism spectrum disorder (2)
Pancreatic carcinoma (1)
Retinal disease (1)
Stomach cancer (1)
Alopecia (1)
Severe acute respiratory syndrome (1)
Pancreatic ductal adenocarcinoma (1)
Alzheimer's disease (1)
Disease free (1)
Mixed disorder as reaction to stress (1)
Acute leukemia (1)
Colon cancer (1)
Wounds and Injuries (1)

Technology Type

Mass Spectrometry (44)
Shotgun proteomics (21)
Mass spectrometry (13)
Gel-based experiment (7)
Bottom-up proteomics (6)
Affinity purification coupled with mass spectrometry proteomics (5)
Data-dependent acquisition (4)
Mass spectrometry assay (3)
Olink affinity proteomics (2)
Affinity proteomics (2)
All-ion fragmentation (2)
Top-down proteomics (2)
Illumina Genome Analyzer II, Illumina HiSeq 2000 (1)
DiaPASEF (1)
SWATH MS (1)

Instrument Platform

LTQ Orbitrap Velos (13)
Liquid Chromatography MS - negative - reverse phase (5)
Liquid Chromatography MS - positive - reverse phase (5)
Liquid Chromatography MS - Negative (LC-MS (Negative)) (3)
Liquid Chromatography MS - Positive (LC-MS (Positive)) (2)
Liquid Chromatography MS - negative - hilic (2)
Liquid Chromatography MS - positive - hilic (2)
Q Exactive Plus (1)
Q Exactive (1)
Liquid Chromatography MS - Negative (LC-MS (NEG)) (1)
Gas Chromatography MS - Positive (GC-MS (Positive)) (1)
Gas Chromatography MS - (1)
Liquid Chromatography MS - Positive (LC-MS (POS)) (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive (1)
Liquid Chromatography MS - alternating - reverse phase (1)
Liquid Chromatography MS - (1)
Liquid Chromatography MS - negative - HILIC (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)

Publication Date

2015 (16)
2013 (16)
2025 (16)
2026 (11)
2022 (11)
2021 (10)
2019 (9)
2024 (8)
2023 (8)
2014 (6)
2020 (6)
2018 (6)
2010 (3)
2009 (2)
2016 (2)
2008 (1)
2007 (1)

UNIPROT ID/AC

Q86YZ3 (11)
P52209 (11)
Q9C075 (11)
Q99456 (11)
Q92764 (11)
Q8N1N4 (11)
Q86Y46 (11)
P48643 (11)
P30613 (11)
O14556 (11)
Q7Z3Z0 (11)
Q7Z3Y8 (11)
Q7Z3Y7 (11)
Q7RTS7 (11)
Q6KB66 (11)
Q14974 (11)
P40227 (11)
P35222 (11)
Q5XKE5 (11)
Q3SY84 (11)
Q15323 (11)
Q14CN4 (11)
Q14532 (11)
Q14525 (11)
Q04695 (11)
Q01546 (11)
P84077 (11)
P62241 (11)
P61204 (11)
P48668 (11)

ENSEMBL ID

ENSG00000170477 (11)
ENSG00000147251 (4)

CHEBI ID

CHEBI:28875 (7)
CHEBI:17895 (7)
CHEBI:16828 (7)
CHEBI:17154 (6)
CHEBI:16467 (6)
CHEBI:17568 (6)
CHEBI:55328 (6)
CHEBI:15354 (6)
CHEBI:15756 (6)
CHEBI:30805 (6)
CHEBI:17351 (6)
CHEBI:17405 (5)
CHEBI:15824 (5)
CHEBI:27480 (5)
CHEBI:28661 (5)
CHEBI:16196 (5)
CHEBI:20067 (5)
CHEBI:30769 (5)
CHEBI:16704 (5)
CHEBI:18132 (5)
CHEBI:17191 (5)
CHEBI:16914 (5)
CHEBI:16040 (5)
CHEBI:16857 (5)
CHEBI:17597 (5)
CHEBI:17203 (5)
CHEBI:17750 (4)
CHEBI:16243 (4)
CHEBI:36274 (4)
CHEBI:22984 (1)

Metabolite Name

L-Arginine (5)
Uracil (5)
L-Tyrosine (5)
Adenosine (5)
Nicotinamide (4)
Choline (4)
Creatinine (4)
L-Carnitine (4)
Hypoxanthine (4)
Salicylic acid (4)
L-Tryptophan (4)
Linoleic acid (4)
Palmitic acid (4)
Adenine (4)
Inosine (4)
Uridine (4)
Quinoline (3)
N-benzylformamide (3)
Pyrrole-2-carboxylic acid (3)
L-Citrulline (3)
N-Oleoylethanolamine (3)
Methyl jasmonate (3)
Quercetin (3)
Indole (3)
4-Pyridoxic acid (3)
Ricinoleic acid (3)
Kynurenic acid (3)
Cortisone (3)
Betaine (3)
Acetylcholine (3)

IsPrivate

False (1)

Modelling Approach

Ordinary differential equation model (1)

Modification

Not available (1)

Study type

Transcription profiling by array (23)
RNA-seq of coding RNA (5)
Other (3)
RNA-seq of non coding RNA (2)
Methylation profiling by high throughput sequencing (1)

Release Date

2025 (540)
2022 (413)
2023 (403)
2024 (398)
2021 (335)
2020 (258)
2019 (146)
2018 (127)
2017 (112)
2016 (79)
2026 (73)
2015 (64)
2014 (54)
2013 (50)
2011 (14)
2012 (12)
2010 (8)
2009 (8)
2008 (4)
2007 (3)
2005 (3)
2002 (3)
2006 (2)
2004 (1)
2001 (1)
1999 (1)
1998 (1)

Lab affiliation

Institute of Genetics & Developmental Biology, Chinese Academy of Sciences (2)
The First Affiliated Hospital of Fujian Medical University (2)
Chinese Academy of Sciences University,Center for Excellence in Molecular & Cellular Sciences, State Key Laboratory of Molecular Biology, Institute of Biochemistry & Cell Biology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 320 Yueyang Rd., Shanghai, China 200031 (1)
Doctor at Tongji Hospital, Huazhong University of Science and Technology, Wuhan, China (1)
Zhejiang University,China (1)
Shanghai Institute of Biochemistry and Cell Biology/Center for Excellence in Molecular Cell Science (1)
Department of Pediatrics, the Affiliated Huai’an No.1 People’s Hospital of Nanjing Medical University, Huai’an , China (1)
Key Laboratory of Zoonosis Research, Ministry of Education, Institute of Zoonosis/ College of Veterinary Medicine,Jilin University, Changchun, China. (1)
Department of Nephrology, Union Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, 430022, China. (1)
institute of genetics and developmental biology, Chinese Academy of Sciences (1)
Department of Plant Pathology and Microbiology, Texas A&M University (1)
Department of Health Technology and Informatics, The Hong Kong Polytechnic University, Hong Kong (1)
Professor Department of Structural Biology Department of Developmental Neurobiology MS 311, D1034C (office) & D1039, D1046 (lab) St. Jude Children's Research Hospital 262 Danny Thomas Place Memphis, TN 38105-3678 (1)
1 Department of Hepatobiliary & Pancreatic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, 430071, PR China. 2 Clinical Medicine Research Center for Minimally Invasive Procedure of Hepatobiliary & Pancreatic Diseases of Hubei Province, Hubei, PR China. 3 Taikang Center for Life and Medical Sciences of Wuhan University (1)
National Key Lab of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University (1)
Lanzhou Veterinary Research Institute, Chinese Academy of Agricultural Science, Xujiaping No.1, Lanzhou, Gansu, 730046 (1)
College of Veterinary Medicine, Huazhong Agricultural University, Wuhan 430070, China (1)
Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, Beijing, China. (1)
Life Sciences Institute, Zhejiang University, Hangzhou, China. (1)
Anonymity for double-blind review (1)
Laboratory of Molecular Genetics and Proteomics, College of Life Science, Capital Normal University, 100048 Beijing, China. (1)
sun yat-sen university (1)
College of Horticulture, Vegetable Genetics and Breeding Laboratory, Anhui Agricultural University, 130 West Changjiang Road, 230036 Hefei, Anhui, China; (1)
Research Center for Blood Engineering and Manufacturing, Cyrus Tang Medical Institute, National Clinical Research Center for Hematologic Diseases, Collaborative Innovation Center of Hematology, Jiangsu Institute of Hematology, Institute of Blood and Marrow Transplantation, The First Affiliated Hospital of Soochow University, State Key Laboratory of Radiation Medicine and Protection, Soochow University, Suzhou, China. (1)
Shenzhen University, China (1)
1Department of Hepatobiliary & Pancreatic Surgery, Zhongnan Hospital of Wuhan University, Wuhan, 430071, PR China. 2Clinical Medicine Research Center for Minimally Invasive Procedure of Hepatobiliary & Pancreatic Diseases of Hubei Province, Hubei, PR China. 3Taikang Center for Life and Medical Sciences of Wuhan University (1)
School of Medicine, Shanghai University, Shanghai 200444, China. (1)
Department of Neurology, UCLA (1)
Shanghai Center for Systems Biomedicine, Shanghai Jiao Tong University, Shanghai, China. (1)
Yangzhou University (1)

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Associations between Serum Mineral Nutrients, Gut Microbiota, and Risk of Neurological, Psychiatric, and Metabolic Diseases: A Comprehensive Mendelian Randomization Study.

Not available

S-EPMC10818407 | biostudies-literature

Mechanisms of autoinhibition of IRF-7 and a probable model for inactivation of IRF-7 by Kaposi's sarcoma-associated herpesvirus protein ORF45.

Not available

S-EPMC3013033 | biostudies-literature

Zhu2007_TF_modulated_by_Calcium

This a model from the article: A theoretical study on activation of transcription factor modulated by intracellular Ca2+ oscillations. Zhu CL, Zheng Y, Jia Y Biophys. Chem.[2007 Aug:129(1):49-55 17560007, Abstract: This work presents bo...

2024-09-02 | BIOMD0000000166 | BioModels

Repair of Adult Mammalian Heart After Damages by Oral Intake of Gu Ben Pei Yuan San.

Not available

S-EPMC6541202 | biostudies-literature

Different treatment strategies and molecular features between right-sided and left-sided colon cancers.

Not available

S-EPMC4458758 | biostudies-literature

Small RNAs as important regulators for the hybrid vigour of super-hybrid rice

Heterosis is an important biological phenomenon; however, the role of small RNA (sRNA) in heterosis of hybrid rice remains poorly described. Here, we performed sRNA profiling of F1 super-hybrid rice LYP9 and its parents using high-throughput sequencing technology, and identified 355 distinct mature ...

ORGANISM(S): Oryza sativa

2014-08-17 | E-GEOD-51468 | biostudies-arrayexpress

A Novel Bispecific Antibody Targeting CD3 and Lewis Y with Potent Therapeutic Efficacy against Gastric Cancer.

Not available

S-EPMC8393954 | biostudies-literature

Quercetin Nanocrystal Gel: A Novel Topical Therapeutic Strategy for Androgenetic Alopecia.

Not available

S-EPMC12473781 | biostudies-literature

Comparative metabolomic analysis of exudates of microcystin-producing and microcystin-free Microcystis aeruginosa strains

Cyanobacterial harmful algal blooms (cHABs) dominated by Microcystis aeruginosa threaten the ecological integrity and beneficial uses of lakes globally. In addition to producing hepatotoxic microcystins (MC), M. aeruginosa exudates (MaE) contain various compounds with demonstrat...

2023-01-16 | MTBLS6603 | MetaboLights

Randomized controlled trial: moxibustion and acupuncture for the treatment of Crohn's disease.

Not available

S-EPMC4138481 | biostudies-literature

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3242 Results

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Organisms

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Tissue

Disease

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Metabolite Name

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Lab affiliation

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