Zika virus - OmicsDI

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Homo sapiens (127)
Zika virus (42)
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mosquito metagenome (2)
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Repository

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Disease

Zika virus congenital syndrome (14)
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Technology Type

Mass Spectrometry (52)
Shotgun proteomics (39)
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Mass spectrometry (4)
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HDMSE (2)
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NMR (1)
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Instrument Platform

NextSeq 500 (8)
Illumina HiSeq 1500 (4)
LTQ Orbitrap Velos (4)
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LTQ Orbitrap (2)
NextSeq 2000 (1)
Illumina MiSeq (1)
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Direct infusion MS - negative (1)
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Liquid Chromatography MS - negative - hilic (1)
Liquid Chromatography MS - positive - hilic (1)
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Liquid Chromatography MS - negative - reverse phase (1)

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2023 (40)
2020 (35)
2025 (33)
2018 (30)
2024 (27)
2021 (26)
2017 (26)
2022 (26)
2019 (25)
2026 (20)
2016 (15)

CHEBI ID

CHEBI:140755 (1)
CHEBI:17844 (1)
CHEBI:171116 (1)
CHEBI:72715 (1)
CHEBI:75108 (1)
CHEBI:42111 (1)
CHEBI:17869 (1)
CHEBI:28281 (1)
CHEBI:16113 (1)
CHEBI:16040 (1)
CHEBI:17981 (1)
CHEBI:17066 (1)
CHEBI:16708 (1)
CHEBI:16349 (1)
CHEBI:16870 (1)
CHEBI:15699 (1)
CHEBI:28875 (1)
CHEBI:15824 (1)
CHEBI:28842 (1)
CHEBI:37550 (1)
CHEBI:17196 (1)
CHEBI:17568 (1)
CHEBI:16946 (1)
CHEBI:16010 (1)
CHEBI:73024 (1)
CHEBI:15891 (1)
CHEBI:18050 (1)
CHEBI:36274 (1)
CHEBI:16411 (1)
CHEBI:15971 (1)

Metabolite Name

O-acetylcarnitine (1)
Cervonyl carnitine (1)
Timnodonyl carnitine (1)
Sphingosine-1-phosphate (1)
L-citrulline (1)
O-acetyl-l-serine (1)
L-homoserine (1)
L-kynurenine (1)
Linoelaidyl carnitine (1)
Chenodeoxyglycocholate (1)
L-histidine (1)
L-asparagine (1)
L-glutamine (1)
L-tryptophan (1)
Sn-glycero-3-phosphocholine (1)
Cholesterol (1)
Indole-3-acetate (1)
5-oxoproline (1)
Taurine (1)
Cytosine (1)
Adenine (1)
Choline (1)
4-hydroxy-2-quinolinecarboxylic acid (1)

First Public Date

2023 (52)
2020 (48)
2019 (45)
2017 (45)
2024 (37)
2022 (37)
2025 (36)
2026 (35)
2021 (34)
2018 (28)
2016 (24)

Classification

viruses (45)

Study type

RNA-seq of coding RNA (8)
Transcription profiling by array (5)
Ribo-seq (4)
High-throughput sequencing (2)
Cell line - High-throughput sequencing (2)
RNA-seq of non coding RNA (2)
DNA-seq (1)

Release Date

2018 (514)
2020 (510)
2021 (475)
2019 (454)
2017 (430)
2022 (375)
2023 (335)
2025 (256)
2024 (252)
2016 (219)
2026 (31)
2015 (10)
2014 (7)
2013 (2)
2012 (2)
2008 (1)

Lab affiliation

Immunopathology of Virus Infections Institute of Virology Technical University of Munich Munich, Germany (4)
Department of Infectious Diseases, Molecular Virology, Heidelberg University, Im Neuenheimer Feld 344, Heidelberg, Germany (2)
Lab of Neuroproteomics, Department of Biochemistry and Tissue Biology, Institute of Biology, University of Campinas (UNICAMP), Campinas, Brazil. (2)
Proteomic Unit, Department of Biochemistry, Institute of Chemistry, Federal University of Rio de Janeiro, Av Athos da Silveira Ramos, 149, CT- A-542, Cidade Universitária 21941-909 Rio de Janeiro, RJ, Brazil (2)
Abiel Roche-Lima, MSc., PhD. Assistant Professor Director, Integrated Informatics Services core IIS-RCMI University of Puerto Rico Medical Science Campus RCMI Program PO Box 365067 San Juan, PR. 00936-5067 Phone: +1 787 758-2525 x 2194 (1)
Assistant Professor of Medicine Department of Medicine Tulane University School of Medicine 1430 Tulane Avenue, New Orleans, LA,70114 (1)
BioOrganic Mass Spectrometry laboratory (LSMBO) Institut Plurisciplinaire Hubert Curien University of Strasbourg. France (1)
Centre for Proteomic Research, B85, Life Sciences Building, University of Southampton, University Road Highfield, Southampton, Hants. SO17 1BJ United Kingdom (1)
Departamento de Bioquímica, Instituto de Química, Universidade Federal do Rio de Janeiro, Rio de Janeiro, Rio de Janeiro, Brazil. (1)
Department of Oncology-Pathology (OnkPat) (PI) (1)
Department of Tropical Medicine, Medical Microbiology, and Pharmacology, John A. Burns School of Medicine, University of Hawaii at Manoa, Honolulu, HI, USA (1)
Departments of Chemistry and Biological Sciences, Vanderbilt University (1)
Dept. Medical Microbiology, Radboud Institute for Molecular Life Sciences, Radboud University Medical Center, Nijmegen, the Netherlands (1)
Dr. Pietro Scaturro, Systems Arbovirology, Leibniz Institute of Virology, Hamburg, Germany (1)
Département de biochimie et de génomique fonctionnelle, Université de Sherbrooke, Sherbrooke, QC, Canada (1)
GlycoProteomics Laboratory Sao Paulo University (1)
Glycobiology Laboratory (1)
Glycoproteomics laboratory (1)
Institut Pasteur (1)
Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Warsaw, Poland (1)
Institute of Biomedical Sciences, Department of Cell and Developmental Biology, University of São Paulo, 05508-000 São Paulo, SP, Brazil. (1)
Institute of Virology, Technical University of Munich (1)
Instituto de Biología Molecular y Celular de Rosario-CONICET. Argentina. (1)
Key Laboratory of Medical Molecular Virology (MOE/NHC/CAMS), School of Basic Medical Sciences, Shanghai Medical College, Fudan University, Shanghai, China. (1)
Korea University College of Medicine, Seoul, Republic of Korea (1)
Lab of Neuroproteomics, Institute of Biology, Department of Biochemistry and Tissue Biology, University of Campinas (UNICAMP), Campinas, Brazil (1)
Lab of Neuroproteomics, Institute of Biology, Department of Biochemistry and Tissue Biology, University of Campinas (UNICAMP), Campinas, Brazil ( lab head ) (1)
Laboratory of Protein Chemistry - Proteomic Unit Department of Biochemistry, Institute of Chemistry, UFRJ Av. Athos da Silveira Ramos, 149, CT, Bl. A, 543, Cidade Universitária 21941-909, Rio de Janeiro, RJ, Brazil Ph: 55 21 39388266 / 55 21 39387353 Laboratory of Proteomics (LabProt) - LADETEC, Institute of Chemistry Av. Horácio Macedo, 1281, Polo de Química, Bl. C, Lab. 324, Cidade Universitária, 21941-598, Rio de Janeiro, RJ, Brazil (1)
Laboratory of Protein Chemistry - Proteomic Unit Department of Biochemistry, Institute of Chemistry, UFRJ Av. Athos da Silveira Ramos, 149, CT, Bl. A, 543, Cidade Universitária, CEP 21941-909, Rio de Janeiro, RJ, Brazil (1)
MRC-University of Glasgow Centre for Virus Research (1)

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Zika virus disrupts steroidogenesis and impairs spermatogenesis by stalling the translation of CYP17A1 mRNA

ZIKV infection is associated with testicular damage and abnormal spermatogenesis. However, the molecular mechanisms underlying these pathogenic processes remain unclear. Here, we demonstrate that ZIKV disrupts Leydig cells' ability to produce testosterone, leading to decreased sperm counts and mo...

2025-06-29 | MTBLS12549 | MetaboLights

Using next generation sequencing to study the genetic diversity of candidate live attenuated Zika vaccines

Zika virus (ZIKV) is a mosquito-transmitted positive-sense RNA virus in the family Flaviviridae. Candidate live-attenuated vaccine (LAV) viruses with engineered deletions in the 3’UTR provide immunity and protection in animal models of ZIKV infection, and phenotypic studies show that LAVs retain pro...

ORGANISM(S): Zika virus

2020-04-13 | E-MTAB-8905 | biostudies-arrayexpress

Effects of Zika virus infection on the metabolome of pregnant women: a longitudinal study

Not available

ORGANISM(S): Homo sapiens

ST002048 | MetabolomicsWorkbench

Binding of the Zika virus genome to endogenous human transcripts

This study aims to study binding events between the Zika virus RNA genome and endogenous transcripts during infection of a human cell line. We develop a novel psolaren-based cross-linking technique to preserve interactions between mRNA and the Zika genome. Interacting RNA molecules are ligated toget...

ORGANISM(S): Homo sapiens

2018-07-13 | E-MTAB-6427 | biostudies-arrayexpress

Inter- and intra-lineage genetic diversity of wild-type Zika viruses reveals both common and distinctive nucleotide variants and clusters of genomic diversity

ZIKV strains belong to three phylogenetic lineages: East African, West African, and Asian/American. RNA virus genomes exist as populations of genetically-related sequences whose heterogeneity may impact viral fitness, evolution, and virulence. The genetic diversity of representative ZIKVs (N=7) fro...

ORGANISM(S): Zika virus

2019-07-30 | E-MTAB-7771 | biostudies-arrayexpress

RiboSeq of African green monkey (Vero) cells infected at a multiplicity of infection (MOI) of 3 with the Asian/American Zika virus (ZIKV) strain, PE243

Vero cells were infected with the Asian/American Zika virus (ZIKV) strain, PE243, at MOI:3 to assess the viral transcriptome. Samples were harvested at 24 hours post-infection (h p.i.) by flash-freezing, without cycloheximide pre-treatment. RNase I treatment was carried out, following which ribosome...

ORGANISM(S): Chlorocebus sabaeus

2024-09-04 | E-MTAB-12971 | biostudies-arrayexpress

Zika virus

Zika virus Genome sequencing and assembly

PRJNA316733 | ENA

Inter and intra-lineage genetic diversity of Zika virus differs for American isolates

Zika virus (ZIKV) is a mosquito-transmitted positive-sense RNA virus in the family Flaviviridae. ZIKV infections are associated with neurodevelopmental deficiencies termed Congenital Zika Syndrome. ZIKV strains are grouped into three phylogenetic lineages: East African, West African, and Asian, whi...

ORGANISM(S): Zika virus

2018-12-31 | E-MTAB-5945 | biostudies-arrayexpress

Genetic analysis of a Zika Virus Envelope Glycosylation and Non-structural protein 4B P36 Double Mutant

Zika virus (ZIKV) is a mosquito-transmitted positive-sense RNA virus in the family Flaviviridae. Live attenuated vaccines have been successfully used to combat infection by flaviviruses, such as yellow fever and Japanese encephalitis viruses. A Zika virus harboring combined mutations in the envelope...

ORGANISM(S): Zika virus

2021-12-31 | E-MTAB-9496 | biostudies-arrayexpress

Zika virus

Zika virus Genome sequencing

PRJNA315525 | ENA

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