Zimmermann H H - OmicsDI

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Unknown (1012)
Proteomics (50)
Transcriptomics (31)
Metabolomics (29)
Genomics (1)

Organisms

Homo sapiens (41)
Mus musculus (16)
Saccharomyces cerevisiae (6)
Rattus norvegicus (2)
Bos taurus (2)
Cytomegalovirus (2)
Escherichia coli (2)
Bacteroides thetaiotaomicron VPI-5482 (1)
Sus scrofa (1)
Arabidopsis thaliana (1)
Aspergillus fumigatus (1)
Aspergillus fumigatus CEA10 (1)
Human herpesvirus 5 strain AD169 (1)
Microcebus murinus (1)
Paenibacillus polymyxa (1)
Streptococcus pyogenes ABC020006030 (1)
Trichoderma reesei (1)
Vaccinia virus GLV-1h68 (1)
synthetic construct (code 12) (1)

Organisms

Homo sapiens (1)

Repository

pride (43)
biostudies-arrayexpress (31)
MetaboLights (27)
MassIVE (5)
GNPS (2)
PanoramaPublic (1)
PeptideAtlas (1)
ENA (1)

Tissue

Cell culture (12)
Kidney (2)
Neutrophil (2)
Skin (2)
Others (1)
Bile (1)
Blood (1)
Blood plasma (1)
Cell suspension culture (1)
Conidium (1)
Embryonic stem cell (1)
Endothelial cell of umbilical vein (1)
Epithelial cell (1)
Fibroblast (1)
HEK-293T cell (1)
HUVEC cell (1)
HeLa cell (1)
HeLa-S3 cell (1)
Heart (1)
Immortal cell line cell (1)
Leukocyte (1)
MRC-5 cell (1)
Malignant cell (1)
Melanocyte (1)
Melanoma cell (1)
Mycelium (1)
Oocyte (1)
Permanent cell line cell (1)
Stem cell (1)
Urine (1)

Disease

Normal (2)
Disease free (2)
Prostate carcinoma (1)
Breast cancer (1)
Celiac disease (1)
Malignant neoplasm of ovary (1)
Noonan syndrome (1)
Sjogren's Syndrome (1)
Skin melanoma (1)

Technology Type

Mass Spectrometry (43)
Shotgun proteomics (26)
Mass spectrometry (25)
Affinity purification coupled with mass spectrometry proteomics (6)
Gel-based experiment (6)
Bottom-up proteomics (4)
Chemical cross-linking coupled with mass spectrometry proteomics (4)
Data-independent acquisition (3)
Mass spectrometry assay (2)
Data-dependent acquisition (2)
SWATH MS (2)
Affinity proteomics (1)
DiaPASEF (1)
SRM/MRM (1)

Instrument Platform

Liquid Chromatography MS - negative - reverse phase (6)
Liquid Chromatography MS - positive - reverse phase (6)
6550 iFunnel Q-TOF LC/MS (4)
Capillary electrophoresis MS - negative (4)
Capillary electrophoresis MS - positive (4)
Liquid Chromatography MS - (3)
Liquid Chromatography MS - negative - hilic (3)
Liquid Chromatography MS - negative - direct infusion (2)
Illumina HiSeq 1500 (1)
Illumina HiSeq 2000 (1)
4000 QTRAP (1)
Orbitrap Exploris 480 (1)
QTRAP 5500 (1)
TSQ Vantage (1)
TimsTOF Pro (1)
Diode array detection MS - (1)
Flow injection analysis MS - (1)
Gas Chromatography MS - positive (1)
LTQ-FT (1)
LTQ-FT (Thermo) (1)
Liquid Chromatography MS - HILIC (1)
Liquid Chromatography MS - negative (1)
Liquid Chromatography MS - positive - hilic (1)
Liquid Chromatography MS – HILIC (1)
Q Exactive (1)
LTQ Orbitrap Velos (1)

Publication Date

2025 (13)
2022 (10)
2021 (10)
2014 (8)
2024 (8)
2023 (8)
2020 (8)
2019 (7)
2013 (6)
2015 (4)
2012 (4)
2011 (4)
2026 (4)
2018 (3)
2017 (3)
2016 (3)
2008 (2)
2010 (1)
2009 (1)
2005 (1)

UNIPROT ID/AC

A0A024R563 (1)
A0A024R8H9 (1)
A0A024RAN2 (1)
A0A024RC46 (1)
A0A087WUD1 (1)
A0A087WVZ5 (1)
A0A087WWK8 (1)
A0A087WXI0 (1)
A0A087X1S3 (1)
A0A0A0MR66 (1)
A0A0A0MS51 (1)
A0A0A0MSA7 (1)
A0A0B4J220 (1)
A0A0C4DG89 (1)
A0A0C4DGT3 (1)
A0AV96 (1)
A0AVT1 (1)
A0FGR8 (1)
A0FGR8-2 (1)
A0FGR8-6 (1)
A0MZ66 (1)
A1KXE4 (1)
A1L020 (1)
A1L0T0 (1)
A1L188 (1)
A1L3X0 (1)
A1X283 (1)
A1XBS5 (1)
A2BFH1 (1)
A2RRP1 (1)

ENSEMBL ID

ENSG00000147251 (1)
ENSG00000170477 (1)
ENSG00000247315 (1)

CHEBI ID

CHEBI:15428 (9)
CHEBI:15741 (8)
CHEBI:16027 (8)
CHEBI:17596 (8)
CHEBI:30769 (8)
CHEBI:30915 (8)
CHEBI:32816 (8)
CHEBI:16708 (7)
CHEBI:16742 (7)
CHEBI:16750 (7)
CHEBI:17015 (7)
CHEBI:17202 (7)
CHEBI:17368 (7)
CHEBI:17509 (7)
CHEBI:17562 (7)
CHEBI:17568 (7)
CHEBI:17687 (7)
CHEBI:17895 (7)
CHEBI:18012 (7)
CHEBI:18107 (7)
CHEBI:15422 (6)
CHEBI:15727 (6)
CHEBI:15996 (6)
CHEBI:16040 (6)
CHEBI:16119 (6)
CHEBI:16335 (6)
CHEBI:16474 (6)
CHEBI:16610 (6)
CHEBI:16675 (6)
CHEBI:16695 (6)

Metabolite Name

Benzoate (4)
Biotin (4)
CMP (4)
Cytosine (4)
DCMP (4)
Glycine (4)
Inosine (4)
Malate (4)
NADPH (4)
Orotate (4)
Pyruvate (4)
Shikimate (4)
Succinate (4)
Xanthosine (4)
2-Oxoadipate (3)
3-Methoxytyramine (3)
4-Pyridoxate (3)
5-Methylcytosine (3)
6-Phosphogluconate (3)
ADP (3)
AMP (3)
ATP (3)
Adenine (3)
Adenosine (3)
Agmatine (3)
CDP (3)
CTP (3)
Carnosine (3)
Cytidine (3)
Dihydroorotate (3)

First Public Date

2014 (1)

Study type

Transcription profiling by array (26)
RNA-seq of coding RNA (5)

Release Date

2021 (127)
2022 (114)
2025 (105)
2023 (102)
2024 (91)
2019 (73)
2020 (71)
2018 (48)
2016 (48)
2015 (44)
2017 (39)
2014 (33)
2012 (27)
2011 (23)
2013 (21)
2026 (17)
2009 (13)
2010 (13)
2005 (9)
2008 (7)
2007 (4)
2003 (4)
2006 (3)
2004 (3)
2002 (2)
2001 (1)
2000 (1)

Lab affiliation

Chair of Biochemistry II, Theodor Boveri-Institute, Biocenter, University of Würzburg, Würzburg, Germany (3)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and Signalling Research Centres BIOSS and CIBSS, University of Freiburg, 79104 Freiburg im Breisgau, Germany (2)
1) Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Switzerland 2) Faculty of Science, University of Zurich, Zurich, Switzerland (1)
1. Biomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, Germany; 2. Applied Bioinformatics, Dept. of Computer Science, University of Tübingen, Germany; 3. Institute for Translational Bioinformatics, University Hospital Tübingen, Germany; 4. Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany; (1)
1. Biomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, Germany; 2. Applied Bioinformatics, Dept. of Computer Science, University of Tübingen, Germany; 3. Quantitative Biology Center (QBiC), University of Tübingen, Germany; 4. Institute for Translational Bioinformatics, University Hospital Tübingen, Germany; 5. Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany (1)
Angiogenesis & Metabolism Laboratory, Max Planck Institut for Heart and Lung Research, 61231 Bad Nauheim, Germany (1)
Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University of Munich, Gregor-Mendel-Strasse 4, D-85354 Freising, Germany (1)
Biomolecular Interactions, Max Planck Institute for Developmental Biology, Tübingen, Germany; Applied Bioinformatics, Dept. of Computer Science, University of Tübingen, Germany; Quantitative Biology Center (QBiC), University of Tübingen, Germany; Institute for Translational Bioinformatics, University Hospital Tübingen, Germany; Institute for Bioinformatics and Medical Informatics, University of Tübingen, Germany; (1)
Centre for Proteome Research, Institute of Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, UK (1)
Chair of Proteomics and Bioanalytics, Technical University of Munich, Freising, Germany (1)
Core Facility Proteomics, Department of Clinical Chemistry, University Medical Center Göttingen, Germany (1)
Dep. of Biology, University of Fribourg, Chemin du Musee 10, CH-1700 Fribourg (1)
Department of Biochemistry and Functional Proteomics, Institute of Biology II, Faculty of Biology and BIOSS Centre for Biological Signalling Studies, University of Freiburg, 79104 Freiburg im Breisgau, Germany (1)
Department of Molecular and Applied Microbiology Leibniz Institute for Natural Product Research and Infection Biology - Hans Knöll Institute Jena, Germany (1)
Department of Molecular and Cellular Pharmacology University of California San Francisco (1)
Dr. Jörn Dengjel Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland T +41 26 300 8631 E joern.dengjel@unifr.ch (1)
Dr. Jörn Dengjel Prof. for Biochemistry and Cell Biology Department of Biology, University of Fribourg Chemin du Musée 10, 1700 Fribourg, Switzerland, T +41 26 300 8631, E joern.dengjel@unifr.ch, F +41 26 300 9741 (1)
EDyP (1)
ETH Zürich (1)
Head Proteomics Platform, MDC Berlin (1)
Head of the Curie Institute Mass Spectrometry Platform (1)
Institute for Microbiology, Friedrich Schiller University, Jena, Germany and Department of Molecular and Applied Microbiology, Leibniz Institute for Natural Product and Infection Biology (HKI), Hans Knöll Institute, Jena, Germany (1)
Institute of Medical Microbiology University of Zurich Gloriastrasse 28/30 CH-8006 Zürich/Switzerland Office: +41 (0)44 634 53 96 Lab1: +41 (0)44 634 53 24 Lab2: +41 (0)44 634 53 37 homepage: http://www.imm.uzh.ch/research/experimental/teamseeger.html Attachments area (1)
Institute of Medical Microbiology, University of Zurich, Zurich, Switzerland (1)
Institute of Molecular Systems Biology, ETH Zürich, Switzerland (1)
Marseille proteomique, Inserm U1068, CNRS UMR 7258, Aix marseille University UM105 (1)
Medizinische Biochemie und Molekularbiologie Universität des Saarlandes Gebäude 44 Kirrbergerstr. 100 66421 Homburg Deutschland phone: +49 (0)6841 1626510 fax: +49 (0)6841 1626288 (1)
Membrane Traffic and Cell Division Lab, Institut Pasteur, UMR3691, CNRS, 25–28 rue du Dr Roux, F-75015 Paris, France (1)
Molecular Genetics, TU Kaiserdslautern (1)
Molecular Genetics, Tech. University Kaiserslautern (1)

Tags

xref:PubMed:19622164 (1)
xref:PubMed:22682473 (1)

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Mapping human microbiome drug metabolism by gut bacteria and their genes

Individuals vary widely in their drug responses, which can be dangerous and expensive due to treatment delays and adverse effects. Growing evidence implicates the gut microbiome in this variability, however the molecular mechanisms remain largely unknown. We measured the ability of 76 diverse hum...

2019-07-10 | MTBLS896 | MetaboLights

Hairless-binding deficient Suppressor of Hairless alleles reveal Su(H) protein levels are dependent on complex formation with Hairless.

Not available

S-EPMC5438185 | biostudies-literature

H-aggregate analysis of P3HT thin films-Capability and limitation of photoluminescence and UV/Vis spectroscopy.

Not available

S-EPMC5007523 | biostudies-literature

Molecular and phenotypic distinction of the very recently evolved insular subspecies Mus musculus helgolandicus ZIMMERMANN, 1953.

Not available

S-EPMC4535776 | biostudies-literature

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli.

Not available

S-EPMC3064808 | biostudies-literature

Functional role of myosin-binding protein H in thick filaments of developing vertebrate fast-twitch skeletal muscle.

Not available

S-EPMC11461142 | biostudies-literature

Low dose PDT - Murine Cells

Murine prostate carcinoma cell lines TRAMP-C1 and TRAMP-C2 were grown for 16 h at 37M-0C with photosensitizer 5-aminolaevulinic acid (5-ALA; 50 M-5g/ml). Then, the cells were sublethally irradiated with laser light (635 nm) at room temperature (using RPMI1640 without phenol red as medium). After ph...

ORGANISM(S): Mus musculus

2011-06-25 | E-MEXP-3016 | biostudies-arrayexpress

Mapping hematologists' HIV testing behavior among lymphoma patients-A mixed-methods study.

Not available

S-EPMC9810165 | biostudies-literature

Transcription profiling of control and catalase-deficient Arabidopsis (Arabidopsis thaliana) plants

In plants, reactive oxygen species and, more particularly, hydrogen peroxide (H2O2) play a dual role as toxic by-products of normal cell metabolism and as regulatory molecules in stress perception and signal transduction. Peroxisomal catalases are an important sink for photorespiratory H2O2. Using A...

ORGANISM(S): Arabidopsis thaliana

2005-10-11 | E-MEXP-449 | biostudies-arrayexpress

Amino Acids 563-566 of the Na⁺/H⁺ Exchanger Isoform 1 C-Terminal Cytosolic Tail Prevent Protein Degradation and Stabilize Protein Expression and Activity.

Not available

S-EPMC7084640 | biostudies-literature

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1123 Results

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