Zm4 - OmicsDI

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Genomics (153)
Unknown (40)
Transcriptomics (29)
Proteomics (7)
Models (3)
Metabolomics (2)

Organisms

Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (20)
Zymomonas mobilis (10)
Andropogon gerardi (7)
Bacteria (7)
Canis lupus familiaris (7)
Cnidaria (7)
Cricetulus griseus (7)
Eukaryota (7)
Fasciola (7)
Hepatitis B virus (7)
Human betaherpesvirus 5 (7)
Madurella mycetomatis (7)
Mesocricetus auratus (7)
Miscanthus x giganteus (7)
Mus musculus (7)
Mycobacterium tuberculosis (7)
Orthoflavivirus (7)
Panicum virgatum (7)
Platyhelminthes (7)
Pseudomonas aeruginosa AES-1R (7)
Rattus norvegicus (7)
Rattus rattus (7)
Rhodococcus jostii RHA1 (7)
Saccharomyces cerevisiae (7)
Severe acute respiratory syndrome coronavirus 2 (7)
Shigella (7)
Sorghastrum nutans (7)
Streptococcus dysgalactiae subsp. equisimilis SK1249 (7)
Zymomonas mobilis subsp. mobilis ATCC 29191 (1)
Zymomonas mobilis subsp. mobilis (1)

Organisms

Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 (96)
Zymomonas mobilis (46)
Zymomonas mobilis subsp. mobilis (3)
Zymomonas mobilis subsp. mobilis ATCC 31822 (2)

Repository

ENA (151)
geo (21)
biostudies-arrayexpress (9)
pride (7)
BioModels (3)
MetaboLights (2)
EVA (1)

Tissue

Cell culture (2)
Permanent cell line cell (1)
Whole body (1)

Disease

Disease free (1)

Technology Type

Mass Spectrometry (7)
Shotgun proteomics (6)
Mass spectrometry (1)
Mass spectrometry assay (1)
Data-dependent acquisition (1)

Instrument Platform

- (1)
Liquid Chromatography MS - positive - reverse-phase (1)
Liquid Chromatography MS - negative - reverse-phase (1)
Liquid Chromatography MS - negative - reverse phase (1)

Publication Date

2013 (6)
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2010 (4)
2023 (4)
2025 (4)
2012 (3)
2020 (3)
2015 (2)
2026 (2)
2019 (2)
2021 (2)
2024 (1)
2004 (1)
2022 (1)
2018 (1)
2016 (1)
2008 (1)

CHEBI ID

CHEBI:27781 (2)
CHEBI:64482 (2)
CHEBI:28716 (2)
CHEBI:62237 (1)
CHEBI:17264 (1)
CHEBI:140680 (1)
CHEBI:229583 (1)
CHEBI:178059 (1)
CHEBI:28494 (1)
CHEBI:60287 (1)
CHEBI:50464 (1)
CHEBI:34811 (1)
CHEBI:16038 (1)
CHEBI:17517 (1)
CHEBI:28875 (1)
CHEBI:16196 (1)
CHEBI:15756 (1)

Metabolite Name

Cardiolipin (2)
Phosphatidylcholine (2)
Phosphatidylglycerol (2)
Phosphatidylethanolamine (2)
Cis-11,12-methyleneoctadecanoic acid (1)
Vaccenic (1)
Myristoleic acid (1)
Palmitoleic acid (1)
Lactobacillic acid (1)
Myristoleic acid (1)
Palmitoleic acid (1)
Palmitic acid (1)
Myristic acid (1)

IsPrivate

False (3)

Model Flag

Non Kinetic (2)

Submitter Keywords

FROG (1)

First Public Date

2017 (88)
2020 (16)
2019 (13)
2024 (10)
2014 (9)
2013 (4)
2026 (2)
2025 (2)
2023 (2)
2021 (2)
2022 (1)
2018 (1)
2015 (1)

Modelling Approach

Constraint-based model (3)

Study type

Transcription profiling by array (7)
Transcription profiling by tiling array (1)
RNA-seq of non coding RNA (1)

Release Date

2023 (6)
2019 (6)
2014 (5)
2013 (5)
2021 (5)
2010 (4)
2020 (4)
2022 (3)
2018 (3)
2012 (2)
2004 (1)
2025 (1)
2017 (1)
2011 (1)
2009 (1)
2005 (1)

Lab affiliation

Renmin South Rd. 4-13, Chengdu 610041, China (2)
Department of Biochemistry and Department of Bacteriology University of Wisconsin-Madison, Madison, WI 53706 Dept. of Energy Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI 53726 (1)
Department of Biomolecular Chemistry and Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA (1)
Department of Biomolecular Chemistry and Department of Chemistry, University of Wisconsin-Madison, Madison, WI, USA. Morgridge Institute for Research, Madison, WI (1)
Professor of Biomolecular Chemistry and Chemistry at University of Wisconsin, Madison, USA (1)
UW Madison (1)

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Systems Biology Analysis of Zymomonas mobilis ZM4 Ethanol Stress Responses

Background Zymomonas mobilis ZM4 is a capable ethanologenic bacterium with high ethanol productivity and ethanol tolerance. Previous studies indicated that several stress-related proteins and changes in the ZM4 membrane lipid composition may contribute to ethanol tolerance. However, the molecular m...

ORGANISM(S): Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821

2013-09-04 | E-GEOD-21165 | biostudies-arrayexpress

Transcription profiling of Z. mobilis ZM1 strain and ZM4 strain during exponential growth phase

Expression profiles of Z. mobilis ZM1 strain and ZM4 strain during exponential growth phase.

ORGANISM(S): Zymomonas mobilis

2004-11-26 | E-MEXP-217 | biostudies-arrayexpress

Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821

Zymomonas mobilis subsp. mobilis ZM4 and 8b genome Resequencing

PRJNA381647 | ENA

Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821

Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821 Genome sequencing

PRJNA391970 | ENA