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TranscriptomicsA novel aCGH method for non-model organisms for assessing genomes and de-novo transcriptome sequencing reads (Danio rerio)
Genomes and transcriptomes of non-model organisms can be analyzed using next-generation sequencing technologies, but de-novo sequencing and annotating a full eukaryotic genome is still challenging. So, -omics experimentation with non-model organisms requires a suite of technologies to obtain reliabl...
ORGANISM(S): Danio rerio 
2014-05-19 | E-GEOD-52121 | biostudies-arrayexpress
TranscriptomicsA novel aCGH method for non-model organisms for assessing genomes and de-novo transcriptome sequencing reads (Staphylococcus aureus)
Genomes and transcriptomes of non-model organisms can be analyzed using next-generation sequencing technologies, but de-novo sequencing and annotating a full eukaryotic genome is still challenging. So, -omics experimentation with non-model organisms requires a suite of technologies to obtain reliabl...
ORGANISM(S): Staphylococcus aureus 
2014-05-19 | E-GEOD-51148 | biostudies-arrayexpress
Transcriptomicsgrowth dependent expression of s. aureus mssa476
Survival and pathogenesis of Staphylococcus aureus in the host requires the ability to respond to changes. Therefore, tight regulation of gene expression via various regulators is essential. Also, the organization of genes in operons is of influence on the regulation of gene expression. Knowledge o...
ORGANISM(S): Staphylococcus aureus subsp. aureus MSSA476 
2010-06-24 | E-GEOD-16488 | biostudies-arrayexpress
TranscriptomicsTranscription profiling of human cell lines
The three-dimensional (3D) folding of the chromosomal fibre in the human interphase nucleus is an important, but poorly understood aspect of gene regulation. Especially basic principles of 3D chromatin and chromosome organisation are still elusive. In this paper, we quantitatively analyse the 3D str...
ORGANISM(S): Homo sapiens 
2008-06-15 | E-GEOD-6890 | biostudies-arrayexpress
TranscriptomicsGene expression patterns and life cycle responses of toxicant exposed chironomids
Cellular stress responses are frequently presumed to be more sensitive than traditional ecotoxicological life cycle endpoints such as survival and growth. Yet, the focus to reduce test duration and to generate more sensitive endpoints has caused transcriptomics studies to be performed at low doses d...
ORGANISM(S): Chironomus riparius 
2013-08-08 | E-GEOD-40010 | biostudies-arrayexpress
TranscriptomicsCombining Next-Generation Sequencing and Microarray Technology into a Transcriptomics Approach for the Non-Model Organism Chironomus riparius
Whole-transcriptome gene-expression analyses are commonly performed in species that have a sequenced genome and for which microarrays are commercially available. To do such analyses in species with no or limited genome data, i.e. non-model organisms, necessary transcriptomics resources, i.e. an anno...
ORGANISM(S): Anopheles gambiae 
2014-05-19 | E-GEOD-53449 | biostudies-arrayexpress
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