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TranscriptomicsPeroxide stress in Sigma54 mutant and Wt
Analyses of the Wild type and the sigma 54 mutant strain NZ7306 with and without peroxide treatment: A Lactobacillus plantarum strain with a deletion in the alternative sigma factor 54 (?54) encoding gene rpoN, displayed a 100 fold higher sensitivity to peroxide as compared to its parental strain. T...
ORGANISM(S): Lactobacillus plantarum 
2008-05-08 | E-GEOD-11351 | biostudies-arrayexpress
ProteomicsColonic metaproteomic signatures of active bacteria and the host in obesity
Colonic metaproteomic signatures of active bacteria and the host in obesity
ORGANISM(S): Metaproteome 
2015-08-15 | MSV000079242 | MassIVE
ModelsPastick2009 - Genome-scale metabolic network of Streptococcus thermophilus (iMP429)
Pastick2009 - Genome-scale metabolic network of Streptococcus thermophilus (iMP429) This model is described in the article: Genome-scale model of Streptococcus thermophilus LMG18311 for metabolic comparison of lactic acid bacteria. Pastink MI, Teusink B, Hols P, Visser S, de...
2015-07-30 | MODEL1507180063 | BioModels
TranscriptomicsSpecific modulation of mucosal immune response, tolerance and proliferation in mice colonized with A. muciniphila
Epithelial cells of the mammalian intestine are covered with a mucus layer that prevents direct contact with intestinal microbes but also constitutes a substrate for mucus-degrading bacteria. To study the effect of mucus degradation on the host response, germ-free mice were colonized with Akkermansi...
ORGANISM(S): Mus musculus 
2011-09-20 | E-GEOD-18587 | biostudies-arrayexpress
ModelsKees2018 - Genome-scale constraint-based model of the mucin-degrader Akkermansia muciniphila
Kees2018 - Genome-scale constraint-based model of the mucin-degrader Akkermansia muciniphila This model is described in the article: Model-driven design of a minimal medium for Akkermansia muciniphila confirms mucus adaptation. van der Ark KCH, Aalvink S, Suarez-D...
2021-02-15 | MODEL1710040000 | BioModels
ModelsFlahaut2013 - Genome-scale metabolic model of L.lactis (MG1363)
Flahaut2013 - Genome-scale metabolic model of L.lactis (MG1363) Genome-scale metabolic model for Lactococcus lactis MG1363 and its application to the analysis of flavor formation. This model is described in the article: ...
2005-01-01 | MODEL1310300000 | BioModels
TranscriptomicsImprovement of Lactobacillus plantarum Aerobic Growth by Comprehensive Transcriptome Analysis
An aerobic Lactobacillus plantarum culture displayed growth stagnation during early growth. Transcriptome analysis revealed that regain of growth after stagnation correlated with activation of CO2-producing pathways suggesting that limiting CO2-concentration induced stagnation. Analogously providing...
ORGANISM(S): Lactobacillus plantarum WCFS1 
2010-05-26 | E-GEOD-10194 | biostudies-arrayexpress
ModelsTeusink2006 - Genome-scale metabolic network of Lactobacillus plantarum (iBT721)
Teusink2006 - Genome-scale metabolic network of Lactobacillus plantarum (iBT721) This model is described in the article: Analysis of growth of Lactobacillus plantarum WCFS1 on a complex medium using a genome-scale metabolic model. Teusink B, Wiersma A, Molenaar D, Francke C,...
2015-07-30 | MODEL1507180045 | BioModels
TranscriptomicsThe sigmaB regulon of B. cereus ATCC14579
The alternative sigma factor sigmaB has an important role in the acquisition of stress-resistance in many gram-positive bacteria. In the foodborne pathogen Bacillus cereus sigmaB is activated strongly upon a heat shock and other stress conditions. Here we describe the identification of the set of si...
ORGANISM(S): Bacillus cereus ATCC 14579 
2010-07-01 | E-GEOD-6005 | biostudies-arrayexpress
TranscriptomicsListeria monocytogenes SOS response determined after mitomycin C exposure
The SOS response is a conserved pathway that is activated under certain stress conditions and is regulated by the repressor LexA and the activator RecA. The food-borne pathogen Listeria monocytogenes contains RecA and LexA homologs, but their roles in Listeria have not been established. In this stud...
ORGANISM(S): Listeria monocytogenes EGD-e 
2010-05-19 | E-GEOD-12634 | biostudies-arrayexpress
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