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Transcriptomics3'-end targeted sequencing of 6 control and 6 TDP-43 KD samples in HEK293
HEK293 FlpIn T-Rex cells were maintained in Dulbeccos Modified Eagle Medium (DMEM) with 10% fetal bovine serum (FBS), supplemented with 3 g/ml blasticidine and 50 g/ml zeocin. For the siRNA-induced knockdown of TDP-43, 20 nM of TDP-43 stealth siRNA was mixed with 10 L of RNAiMAX following the manufa...
ORGANISM(S): Homo sapiens 
2017-05-01 | E-MTAB-4732 | biostudies-arrayexpress
ProteomicsC.elegans - Whole organism, L1, SC (Schrimpf,plos_biology,2009)
abundance based on Spectral counting, L1, Interaction consistency score: 14.4, Coverage: 30
ORGANISM(S): 6239 
2009-00-00 | 1631984665 | PAXDB
ProteomicsC.elegans - Whole organism, Embryo, SC (Schrimpf,plos_biology,2009)
abundance based on Spectral counting, embryo, Interaction consistency score: 12.0, Coverage: 25
ORGANISM(S): 6239 
2009-00-00 | 929936456 | PAXDB
ProteomicsC.elegans - Whole organism, Dauer, SC (Schrimpf,plos_biology,2009)
abundance based on Spectral counting, Dauer, Interaction consistency score: 12.8, Coverage: 29
ORGANISM(S): 6239 
2009-00-00 | 1475773660 | PAXDB
ProteomicsChromID identifies the protein interactome at chromatin marks
Chromatin modifications instruct genome function through spatiotemporal recruitment of regulatory factors to the genome. However, how these modifications define the proteome composition at distinct chromatin states remains to be fully characterized. Here, we made use of natural protein domains as mo...
ORGANISM(S): Mus musculus (Mouse) 
2020-04-30 | PXD017235 | Pride
Chromatin Systems biology Chromatin proteomics Epigenetics Synthetic biology 
ProteomicsHuman dental calculus LC-MS/MS
The purpose of this study was to investigate oral microbiome and host proteins in archaeological human dental tissues using a shotgun proteomics approach. The research focuses on dental calculus (mineralized plaque), dentine, a carious lesion, and an alveolar bone abscess from the medieval site of D...
ORGANISM(S): Bos Taurus (ncbitaxon:9913) Homo Sapiens (ncbitaxon:9606) Ovis (ncbitaxon:9935) 
2016-10-23 | MSV000080279 | MassIVE
UnknownA genome-wide association study in autoimmune neurological syndromes with anti-GAD65 autoantibodies.
Not available
S-EPMC9976967 | biostudies-literature
ProteomicsRpomeroyi DSS-3 - Whole organism, NSAF (Krayushkinaetal,scidata2019)
abundance based on NSAF, Interaction consistency score: 10.0, Coverage: 45
ORGANISM(S): 246200 
2019-00-00 | 611508931 | PAXDB
ProteomicsRpomeroyi DSS-3 - Whole organism, SC (Krayushkinaetal,scidata2019)
abundance based on Spectral counting, Interaction consistency score: 9.3, Coverage: 38
ORGANISM(S): 246200 
2019-00-00 | 402674203 | PAXDB
ProteomicsSsalar - Liver, iBAQ (Nuez-ortinetal,bmcgenomics2018)
abundance based on iBAQ, Interaction consistency score: 4.4, Coverage: 8
ORGANISM(S): 8030 
2018-00-00 | 557577734 | PAXDB
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