Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

E-GEOD-9723

ABSTRACT: Transcription profiling by array of human gingival epithelial cells infected with Aggregatibacter actinomycetemcomitans or Porphyromonas gingivalis

OTHER RELATED OMICS DATASETS IN: PRJNA103635

PROVIDER: E-GEOD-9723 | ExpressionAtlas | 2025-01-24

REPOSITORIES: ExpressionAtlas

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	E-GEOD-9723-analysis-methods.tsv	Tabular
	E-GEOD-9723-atlasExperimentSummary.Rdata	Rdata
	E-GEOD-9723-configuration.xml	Xml
	E-GEOD-9723-percentile-ranks.tsv	Tabular
	E-GEOD-9723-zoomifications-log.tsv	Tabular

Items per page:

1 - 5 of 86

Similar Datasets

Proteomic analysis of post-translational modifications in HCoV-229E-infected immortalized human lung epithelial cells (A549)

Project description:TMT18-labeled proteome-wide profiling of post-translational modifications in mock-infected and infected human lung epithelial cells (A549). Human lung epithelial (A549) cells were infected and mock-infected with HCoV-229E. Cells were harvested at 8, 16, and 24 hours post-infection. Extracted proteins were digested with LysC + Trypsin, then TMT18-labeled. Samples were split into 6 fractions and run on the Orbitrap Exploris 480. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline.

2025-12-22 | MSV000100311 | MassIVE

Proteomic analysis of phosphorylation in HCoV-229E-infected immortalized human lung fibroblasts (MRC5)

Project description:TMT18-labeled proteome-wide profiling of post-translational modifications (phosphorylation) in mock-infected and infected human lung epithelial cells (MRC5). Human lung epithelial (MRC5) cells were infected and mock-infected with HCoV-229E. Cells were harvested at 8, 16, and 24 hours post-infection. Extracted proteins were digested with trypsin, then TMT18-labeled and enriched for phosphorylation. Samples were run on the Q Exactive HF-X. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline.

2025-12-21 | MSV000100300 | MassIVE

Proteomic analysis of acetylation in HCoV-229E-infected immortalized human lung fibroblasts (MRC5)

Project description:TMT18-labeled proteome-wide profiling of post-translational modifications (acetylation) in mock-infected and infected human lung epithelial cells (MRC5). Human lung epithelial (MRC5) cells were infected and mock-infected with HCoV-229E. Cells were harvested at 8, 16, and 24 hours post-infection. Extracted proteins were digested with trypsin, then TMT18-labeled and enriched for acetylation. Samples were run on the Q Exactive HF-X. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline.

2025-12-21 | MSV000100299 | MassIVE

Proteomic analysis of post-translational modifications in HCoV-229E-infected immortalized human lung fibroblasts (MRC5)

Project description:TMT18-labeled proteome-wide profiling of post-translational modifications in mock-infected and infected human lung epithelial cells (MRC5). Human lung epithelial (MRC5) cells were infected and mock-infected with HCoV-229E. Cells were harvested at 8, 16, and 24 hours post-infection. Extracted proteins were digested with trypsin, then TMT18-labeled. Samples were split into 12 fractions and run on the Q Exactive Plus. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline.

2025-12-20 | MSV000100295 | MassIVE

Proteomic analysis of redox PTMs in HCoV-229E-infected immortalized human lung epithelial cells (A549)

Project description:TMT18-labeled proteome-wide profiling of post-translational modifications (redox) in mock-infected and infected human lung epithelial cells (A549). Human lung epithelial (A549) cells were infected and mock-infected with HCoV-229E. Cells were harvested at 8, 16, and 24 hours post-infection. Extracted proteins were digested with LysC + Trypsin, then TMT18-labeled and enriched for redox PTMs. Samples were split into 6 fractions and run on the Orbitrap Exploris 480. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline.

2025-12-22 | MSV000100313 | MassIVE

Proteomic analysis of acetylation in HCoV-229E-infected immortalized human lung epithelial cells (A549)

Project description:TMT18-labeled proteome-wide profiling of post-translational modifications (acetylation) in mock-infected and infected human lung epithelial cells (A549). Human lung epithelial (A549) cells were infected and mock-infected with HCoV-229E. Cells were harvested at 8, 16, and 24 hours post-infection. Extracted proteins were digested with LysC + Trypsin, then TMT18-labeled and enriched for acetylation. Samples were split into 6 fractions and run on the Orbitrap Exploris 480. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline.

2025-12-22 | MSV000100308 | MassIVE

Proteomic analysis of phosphorylation in HCoV-229E-infected immortalized human lung epithelial cells (A549)

Project description:TMT18-labeled proteome-wide profiling of post-translational modifications (phosphorylation) in mock-infected and infected human lung epithelial cells (A549). Human lung epithelial (A549) cells were infected and mock-infected with HCoV-229E. Cells were harvested at 8, 16, and 24 hours post-infection. Extracted proteins were digested with LysC + Trypsin, then TMT18-labeled and enriched for phosphorylation. Samples were split into 6 fractions and run on the Orbitrap Exploris 480. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline.

2025-12-23 | MSV000100324 | MassIVE

Proteomic analysis of redox PTMs in HCoV-229E-infected immortalized human lung fibroblasts (MRC5)

Project description:TMT18-labeled proteome-wide profiling of post-translational modifications (redox) in mock-infected and infected human lung epithelial cells (MRC5). Human lung epithelial (MRC5) cells were infected and mock-infected with HCoV-229E. Cells were harvested at 8, 16, and 24 hours post-infection. Extracted proteins were digested with trypsin, then TMT18-labeled and enriched for redox PTMs. Samples were split into 12 fractions and run on the Q Exactive Plus. Data was searched with MS-GF+ using PNNL's DMS Processing pipeline.

2025-12-20 | MSV000100296 | MassIVE

Host microRNA molecular signatures associated with human H1N1 and H3N2 influenza A viruses

Project description:In this study, we performed a miRNA global profiling in human lung epithelial cells (A549) infected by two different subtypes of human influenza A viruses (H1N1 and H3N2). A549 cells were either mock-infected or infected at a multiplicity of infection (MOI) of 1 with H1N1 or H3N2 viruses, and total RNAs were isolated at 24 hours post-infection (hpi). An MOI of 1 was performed to ensure that 100% of the cells were infected at 24 hpi, a strategy that we have previously validated and used for a transcriptional profiling study of infected cells (Josset et al. , 2010). The purified RNAs were subjected to reverse transcription using a pool of miRNA RT primers (Human pool A v2.1, Applied Biosystems) and subsequently amplified and quantified by RT-qPCR in a TaqMan array MicroRNA card (Applied biosystems).

2013-04-03 | E-GEOD-42003 | biostudies-arrayexpress

Homo sapiens

Project description:Transcriptome profiling of influenza virus-infected human bronchial epithelial cells

| PRJNA305099 | ENA