Genes differentially expressed in Pseudomonas chlororaphis 30-84 SCV

ABSTRACT: To better understand transcriptional changes in the SCV, RNA-seq analyses were conducted by comparing a SCV mutant to the wild-type. Transcriptomic profiling identified more than 1000 genes indicating a significant reprograming of gene expression in the SCV mutant. In accordance with observed phenotypes, genes involved in metabolism functions, motility and phenazine production were downregulated; whereas, oxidative stress and iron uptake genes were significantly upregulated. A total of 5 samples were analyzed in AB medium + 2% casamino acids, Pseudomonas chlororaphis wild type strain (3 replicates); Pseudomonas chlororaphis SCV mutant (2 replicates).

ORGANISM(S): Pseudomonas chlororaphis subsp. aureofaciens 30-84

SUBMITTER: Dongping Wang 

PROVIDER: E-GEOD-51293 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress