Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

Dataset Information

Prenatal stress-induced programming of genome-wide promoter DNA methylation in 5-Htt deficient mice

ABSTRACT: The serotonin transporter (5-HTT) gene-linked polymorphic region has been suggested to play a modulatory role in mediating the effects of early-life stress on psychopathology rendering carriers of the low-expression short (s)-allele more vulnerable to environmental adversity in later life. Here we analyzed the effects of prenatal stress (PS), 5-Htt genotype, and an interactin of both on DNA methylation in the hippocampi of female C57BL/6 mice. Here, we applied Methylated DNA ImmunoPrecipitation (MeDIP) in a maternal restraint stress paradigm to perform a global promoter DNA methylation screen: Hippocampal DNA of wild type and 5-Htt +/- mice in stressed and control environments were analyzed to define genotype- (G) and environment-dependent (E) as well as GxE-interactive effects on promoter DNA methylation in the brain region, where marked effects were expected. MeDIP-based promoter DNA methylation screen

ORGANISM(S): Mus musculus

SUBMITTER: Claus Scholz

PROVIDER: E-GEOD-51634 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Prenatal stress-induced programming of genome-wide promoter DNA methylation in 5-HTT-deficient mice.

Schraut K G KG Jakob S B SB Weidner M T MT Schmitt A G AG Scholz C J CJ Strekalova T T El Hajj N N Eijssen L M T LM Domschke K K Reif A A Haaf T T Ortega G G Steinbusch H W M HW Lesch K P KP Van den Hove D L DL

Translational psychiatry 20141021

The serotonin transporter gene (5-HTT/SLC6A4)-linked polymorphic region has been suggested to have a modulatory role in mediating effects of early-life stress exposure on psychopathology rendering carriers of the low-expression short (s)-variant more vulnerable to environmental adversity in later life. The underlying molecular mechanisms of this gene-by-environment interaction are not well understood, but epigenetic regulation including differential DNA methylation has been postulated to have a ...[more]

PMID: 25335169

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Project description:Aspergillus flavus first gained scientific attention for its production of aflatoxin, the most potent naturally occurring toxin and hepatocarcinogenic secondary metabolite. For several decades, The DNA methylation status of A. flavus remains to be controversial. We first applied bisulfite sequencing, the gold standard at present, in conjunction with a biological replicate strategy to investigate the DNA methylation profiling of A. flavus genome. Our results reveal that the DNA methylation level of this fungus turns out to be negligible, comparable to the unmethylated lambda DNA we set as the false positive control of our bisulfite experiments. When comparing the DNA methyltransferase homolog of A. flauvs with that from several selected hypermethylated speices, we find that the DNA methyltransferase homolog of A.flavus as well as the other Aspergillus members groups closely with the RID from Neurospora crassa and Masc1 from Ascobolus immerses, which has been reported as DMT-incapable, but it diverges distantly from the other capable DNA methyltransferases. We observe significant depletion of repeat components within the A. flavus, which may possibly explain the lack of DNA methylation in this fungus. What's more, the RIP-index of the repeat of A. flavus turns out to be higher than the fungi without RID-like enzyme, suggesting this asexual fungus may possibly possess RIP process during the obscure sexual-stage which is very evanescent and may potentially related to DNA methylation. This work contributes to our understanding on the DNA methylation status of A. flavus. Also, it reinforces our views on the DNA methylation in fungal species. What's more, our strategy of applying bisulfite sequencing to DNA methylation detection on species with low DNA methylation may serve as a reference for later scientific investigations on other hypomethylated species. Two replicates were subjected to bisulfite conversion independently, unmethylated lambda DNA as a false positive control is added to both replicates.

Dataset Information

Prenatal stress-induced programming of genome-wide promoter DNA methylation in 5-Htt deficient mice

Publications

Prenatal stress-induced programming of genome-wide promoter DNA methylation in 5-HTT-deficient mice.

Similar Datasets

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