Stress responsive gene expression in rice cultivars

ABSTRACT: In this study, we aim to present a global view of transcriptome dynamics in different rice cultivars (IR64, Nagina 22 and Pokkali) under control and stress conditions. More than 50 million high quality reads were obtained for each tissue sample using Illumina platform. Reference-based assembly was performed for each rice cultivar. The transcriptome dynamics was studied by differential gene expression analyses between stress treatment and control sample. We collected seedlings of three rice cultivars subjected to control (kept in water), desiccation (transferred on folds of tissue paper) and salinity (transferred to beaker containing 200 mM NaCl solution) treatments. Total RNA isolated from these tissue samples was subjected to Illumina sequencing. The sequence data was further filtered usi

ORGANISM(S): Oryza sativa

SUBMITTER: Mukesh Jain 

PROVIDER: E-GEOD-60287 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress