Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Comparative genomic hybridization of several Enterococcus faecalis strains compared to strain V583

ABSTRACT: Gene content in various Enterococcus faecalis strains compared to E. faecalis V583. Strains have been compared to the V583 strain by comparative genomic hybridization using genome-wide PCR-based microarrays representing the V583 genome. Genes have been deemed "present" or "divergent" in the various strains.

ORGANISM(S): Enterococcus faecalis

SUBMITTER: Ingolf Nes 

PROVIDER: E-MEXP-931 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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Publications

Survey of genomic diversity among Enterococcus faecalis strains by microarray-based comparative genomic hybridization.

Aakra Agot A   Nyquist O Ludvig OL   Snipen Lars L   Reiersen Turid S TS   Nes Ingolf F IF  

Applied and environmental microbiology 20070112 7

We have compared nine Enterococcus faecalis strains with E. faecalis V583 by comparative genomic hybridization using microarrays (CGH). The strains used in this study (the "test" strains) originated from various environments. CGH is a powerful and promising tool for obtaining novel information on genome diversity in bacteria. By CGH, one obtains clues about which genes are present or divergent in the strains, compared to a reference strain (here, V583). The information obtained by CGH is importa  ...[more]

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