RNA-seq of Actinosynnema mirum grown in GYM medium compared to growth in TB medium.

ABSTRACT: Actinosynnema mirum cells were grown in 3 biological replicates and harvested in exponential growth phase either grown in terrific broth (TB) or in glucose-yeast-malt (GYM) medium to analyse the differential gene expression under different grwoth media. A preculture of A. mirum was grown in 20 mL NL148 medium in 100 mL shake flasks for 3 days at 28 °C and 180 rpm (2.5 cm shaking diameter). 1 mL of the preculture was transferred to 60 mL terrific broth (TB) or 60 mL glucose-yeast-malt (GYM) medium in 500 mL shake flasks cultivated for 20 h at 28 °C and 180 rpm (2.5 cm shaking diameter). Pre and main culture were cultivated in triplicates. 495 µL of cultures was transferred to 96 well plates and 5 µL ritonavir in a final concentration of 0.1 mg mL-1 was added. Samples were incubated at 28 °C

INSTRUMENT(S): Illumina HiSeq 1500

ORGANISM(S): Actinosynnema mirum DSM 43827

SUBMITTER: Lisa-Marie Schmitz 

PROVIDER: E-MTAB-10100 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress