Single-cell RNA-sequencing data from developing embryonic human finger joints

ABSTRACT: A single cell atlas of developing human embryonic proximal and distal interphalangeal finger joints. This deposition holds the raw 10x single-cell sequencing data in FASTQ format and processed data in anndata format. All of the anndata objects contain normalised counts in the .X slot and gene names in the anndata.var. They hold the cluster assignments for the related figure(s) and are ready for use with cellxgene. The six anndata objects are described below: (1) anndata_allQCed_cells_SF2.h5ad. This is the primary object which additionally holds the raw counts for all cells in the .layers[‘counts’] slot and the Ensembl gene IDs in the .var table. It is recommended to use this object for data analysis. The object contains the data shown in Extended Data Fig. S2a. Integration with scVI was p

INSTRUMENT(S): Illumina NovaSeq 6000

ORGANISM(S): Homo sapiens

SUBMITTER: Stephen Sansom 

PROVIDER: E-MTAB-14722 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress