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ChIP-seq analysis of LPS trained BMDMs reveals remodeling of Histone 3 Lysine 4 tri-methylation (H3K4me3)

ABSTRACT: The aim of this study is to profile the distribution of the active histone modification H3K4me3 in BMDMs from WT and SLC1A5_var transgenic mice after low-dose LPS training. We compared the data of ChIP-seq performed on fragmented chromatin immunoprecipitated with anti-H3K4me3 antibody in naive and trained BMDM from both genotypes. Inter-group comparisons revealed increased differentially enriched peaks near promoters of pro-inflammatory genes of trained WT BMDMs, where as this changes were blunted in Tg BMDMs. Since SLC1A5_var function as unique mitochondrial glutamine transporter, the results indicate that altered glutaminolysis could impact epigenetic regulation under LPS-training,

INSTRUMENT(S): Illumina NovaSeq X

ORGANISM(S): Mus musculus

SUBMITTER: Ya Chun Yu

PROVIDER: E-MTAB-16196 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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ATAC-seq analysis of LPS-trained bone marrow derived macrophages (BMDMs) from WT and SLC1A5_var transgenic mice.

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