Oryza sativa strain:CL 161, CL 151 Transcriptome or Gene expression

ABSTRACT: Bacterial panicle blight caused by the bacterium Burkholderia glumae is an emerging disease of rice in the United States. Not much is known about this disease, the disease cycle or any source of disease resistance. To understand the interaction between rice and Burkholderia glumae, we used transcriptomics via next-generation sequencing (RNA-Seq) and bioinformatics to identify differentially expressed transcripts between resistant and susceptible interactions and formulate a model for rice resistance to the disease. There was a total of 36 tissue samples that included 2 rice genotypes (CL 151 and CL 161) × 2 treatment groups (water control and bacterium inoculated) × 3 time points × 3 biological replicates. Note: Samples in SRA were assigned the same sample accession. This is incorrect a

INSTRUMENT(S): Illumina HiSeq 2000

ORGANISM(S): Oryza sativa

SUBMITTER: Zenaida Magbanua 

PROVIDER: E-MTAB-4406 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress