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Metabolomics,Unknown,Transcriptomics,Genomics,Proteomics

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Single cell RNA-Seq of the mouse heart in response to chronic stress

ABSTRACT: We characterized single-cell transcriptional profiles of heart ventricles of C57BL/6J female and male mice subjected to a chronic stress, two weeks of continuous administration of Angiotensin II. The cell preparation we sequenced consisted of metabolically active, nucleated non-myocyte cells which were depleted of endothelial cells, mixed with nuclei isolated from cardiomyocytes. The goal of this experiment included characterizing cellular diversity in stressed and unstressed hearts, uncovering potential drivers of cardiac fibrosis and hypertrophy, and quantifying sexual dimorphism in cardiac gene expression.

INSTRUMENT(S): Illumina HiSeq 4000

ORGANISM(S): Mus musculus

SUBMITTER: Dan Skelly

PROVIDER: E-MTAB-8810 | biostudies-arrayexpress |

REPOSITORIES: biostudies-arrayexpress

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High-Resolution Transcriptomic Profiling of the Heart During Chronic Stress Reveals Cellular Drivers of Cardiac Fibrosis and Hypertrophy.

McLellan Micheal A MA Skelly Daniel A DA Dona Malathi S I MSI Squiers Galen T GT Farrugia Gabriella E GE Gaynor Taylah L TL Cohen Charles D CD Pandey Raghav R Diep Henry H Vinh Antony A Rosenthal Nadia A NA Pinto Alexander R AR

Circulation 20200730 15

<h4>Background</h4>Cardiac fibrosis is a key antecedent to many types of cardiac dysfunction including heart failure. Physiological factors leading to cardiac fibrosis have been recognized for decades. However, the specific cellular and molecular mediators that drive cardiac fibrosis, and the relative effect of disparate cell populations on cardiac fibrosis, remain unclear.<h4>Methods</h4>We developed a novel cardiac single-cell transcriptomic strategy to characterize the cardiac cellulome, the ...[more]

PMID: 32795101

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