Dataset Information

Mechanism of icariin for the treatment of osteoarthritis based on network pharmacology and molecular docking method.

ABSTRACT:

Background

Icarin's mechanism of action in osteoarthritis (OA) was explored using network pharmacology and the GEO database, and then further validated using molecular docking.

Methods

GEO database using network pharmacology identified differential genes in OA based on Icariin's possible targets predicted by pharmmapper database. Combining the differentially expressed genes in OA with the OA-related targets, the overlapping targets were removed. In order to determine what Icariin's core targets are for treating OA, PPI network analysis was performed using OA-related targets and possible Icariin targets. Furthermore, molecular docking was used to verify the chemical's binding to the targets. Final steps included Gene Ontology (GO) enrichment analysis and Kyoto Encyclopedia of genes and genomes (KEGG) pathway enrichment analysis. Cytoscape was used to construct a network of compound-target-pathway-disease.

Results

Protein-protein interactions between overlapping targets revealed 151 intersection targets based on a network analysis. The top ten targets with the highest enrichment scores were SRC, MAPK1, HSP90AA1, AKT1, PTPN11, ESR1, EGFR, RhoA, JAK2, and MAPK14. KEGG enrichment analysis showed that the pathways at which Icariin intervention occurs include the OA including FOXO signaling pathway, and estrogen signaling pathway. The GO analysis result showed that various biologic processes such as proteolysis, angiogenesis, innate immune response, and positive regulation of inflammatory response were involved in treatment. Molecular docking analysis confirmed that Icariin could bind well to the targets through intermolecular forces.

Conclusion

With its multi-targeting and multi-pathway characteristics, Icariin is a promising candidate drug for treating OA.

SUBMITTER: Gu JY

PROVIDER: S-EPMC10492078 | biostudies-literature | 2023

REPOSITORIES: biostudies-literature

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Publications

Mechanism of icariin for the treatment of osteoarthritis based on network pharmacology and molecular docking method.

Gu Jin-Yu JY Li Fa-Jie FJ Hou Cheng-Zhi CZ Zhang Yue Y Bai Zi-Xing ZX Zhang Qing Q

American journal of translational research 20230815 8

<h4>Background</h4>Icarin's mechanism of action in osteoarthritis (OA) was explored using network pharmacology and the GEO database, and then further validated using molecular docking.<h4>Methods</h4>GEO database using network pharmacology identified differential genes in OA based on Icariin's possible targets predicted by pharmmapper database. Combining the differentially expressed genes in OA with the OA-related targets, the overlapping targets were removed. In order to determine what Icariin' ...[more]

PMID: 37692948

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Dataset Information

Mechanism of icariin for the treatment of osteoarthritis based on network pharmacology and molecular docking method.

Background

Methods

Results

Conclusion

Publications

Mechanism of icariin for the treatment of osteoarthritis based on network pharmacology and molecular docking method.

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