Protocol to train a support vector machine for the automatic curation of bacterial cell detections in microscopy images.
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ABSTRACT:
SUBMITTER: Steemans B
PROVIDER: S-EPMC10850855 | biostudies-literature | 2024 Feb
REPOSITORIES: biostudies-literature
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Protocol to train a support vector machine for the automatic curation of bacterial cell detections in microscopy images.
Steemans Bart B Govers Sander K SK
STAR protocols 20240202 1
Manual curation of bacterial cell detections in microscopy images remains a time-consuming and laborious task. This work offers a comprehensive, step-by-step tutorial on training a support vector machine to autonomously distinguish between good and bad cell detections. Jupyter notebooks are included to perform feature extraction, labeling, and training of the machine learning model. This method can readily be incorporated into profiling pipelines aimed at extracting a multitude of features acros ...[more]
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