The comparison of different pre- and post-analysis filters for determination of exon-level alternative splicing events using Affymetrix arrays.

ABSTRACT: Understanding the biologic significance of alternative splicing has been impeded by the difficulty in systematically identifying and validating transcript isoforms. Current exon array workflows suggest several different filtration steps to reduce the number of tests and increase the detection of alternative splicing events. In this study, we examine the effects of the suggested pre-analysis filtration by detection above background P value or signal intensity. This is followed post-analytically by restriction of exon expression to a fivefold change between groups, limiting the analysis to known alternative splicing events, or using the intersection of the results from different algorithms. Combinations of the filters are also examined. We find that none of the filtering methods reduces the

SUBMITTER: Whistler T 

PROVIDER: S-EPMC2841991 | biostudies-literature | 2010 Apr

REPOSITORIES: biostudies-literature