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Somatic mutation of CDKN1B in small intestine neuroendocrine tumors.


ABSTRACT: The diagnosed incidence of small intestine neuroendocrine tumors (SI-NETs) is increasing, and the underlying genomic mechanisms have not yet been defined. Using exome- and genome-sequence analysis of SI-NETs, we identified recurrent somatic mutations and deletions in CDKN1B, the cyclin-dependent kinase inhibitor gene, which encodes p27. We observed frameshift mutations of CDKN1B in 14 of 180 SI-NETs, and we detected hemizygous deletions encompassing CDKN1B in 7 out of 50 SI-NETs, nominating p27 as a tumor suppressor and implicating cell cycle dysregulation in the etiology of SI-NETs.

SUBMITTER: Francis JM 

PROVIDER: S-EPMC4239432 | biostudies-literature | 2013 Dec

REPOSITORIES: biostudies-literature

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Somatic mutation of CDKN1B in small intestine neuroendocrine tumors.

Francis Joshua M JM   Kiezun Adam A   Ramos Alex H AH   Serra Stefano S   Pedamallu Chandra Sekhar CS   Qian Zhi Rong ZR   Banck Michaela S MS   Kanwar Rahul R   Kulkarni Amit A AA   Karpathakis Anna A   Manzo Veronica V   Contractor Tanupriya T   Philips Juliet J   Nickerson Elizabeth E   Pho Nam N   Hooshmand Susanne M SM   Brais Lauren K LK   Lawrence Michael S MS   Pugh Trevor T   McKenna Aaron A   Sivachenko Andrey A   Cibulskis Kristian K   Carter Scott L SL   Ojesina Akinyemi I AI   Freeman Samuel S   Jones Robert T RT   Voet Douglas D   Saksena Gordon G   Auclair Daniel D   Onofrio Robert R   Shefler Erica E   Sougnez Carrie C   Grimsby Jonna J   Green Lisa L   Lennon Niall N   Meyer Tim T   Caplin Martyn M   Chung Daniel C DC   Beutler Andreas S AS   Ogino Shuji S   Thirlwell Christina C   Shivdasani Ramesh R   Asa Sylvia L SL   Harris Chris R CR   Getz Gad G   Kulke Matthew M   Meyerson Matthew M  

Nature genetics 20131103 12


The diagnosed incidence of small intestine neuroendocrine tumors (SI-NETs) is increasing, and the underlying genomic mechanisms have not yet been defined. Using exome- and genome-sequence analysis of SI-NETs, we identified recurrent somatic mutations and deletions in CDKN1B, the cyclin-dependent kinase inhibitor gene, which encodes p27. We observed frameshift mutations of CDKN1B in 14 of 180 SI-NETs, and we detected hemizygous deletions encompassing CDKN1B in 7 out of 50 SI-NETs, nominating p27  ...[more]

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