No3CoGP: non-conserved and conserved coexpressed gene pairs.

ABSTRACT:

Background

Analyzing the microarray data of different conditions, one can identify the conserved and condition-specific genes and gene modules, and thus can infer the underlying cellular activities. All the available tools based on Bioconductor and R packages differ in how they extract differential coexpression and at what level they study. There is a need for a user-friendly, flexible tool which can start analysis using raw or preprocessed microarray data and can report different levels of useful information.

Findings

We present a GUI software, No3CoGP: Non-Conserved and Conserved Coexpressed Gene Pairs which takes Affymetrix microarray data (.CEL files or log2 normalized.txt files) along with annotation file (.csv file), Chip Definition File (CDF file) and probe file as in

SUBMITTER: Mal C 

PROVIDER: S-EPMC4295278 | biostudies-literature | 2014 Dec

REPOSITORIES: biostudies-literature