The biology of nematode- and IL4R?-dependent murine macrophage polarization in vivo as defined by RNA-Seq and targeted lipidomics.
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ABSTRACT: Alternatively activated macrophages (AAM?) are a major component of the response to helminth infection; however, their functions remain poorly defined. To better understand the helminth-induced AAM? phenotype, we performed a systems-level analysis of in vivo derived AAM? using an established mouse model. With next-generation RNA sequencing, we characterized the transcriptomes of peritoneal macrophages from BALB/c and IL4R?(-/-) mice elicited by the nematode Brugia malayi, or via intraperitoneal thioglycollate injection. We defined expression profiles of AAM?-associated cytokines, chemokines, and their receptors, providing evidence that AAM? contribute toward recruitment and maintenance of eosinophilia. Pathway analysis highlighted complement as a potential AAM?-effector function. Up-regulated mitochondrial genes support in vitro evidence associating mitochondrial metabolism with alternative activation. We mapped macrophage transcription start sites, defining over-represented cis-regulatory motifs within AAM?-associated promoters. These included the binding site for PPAR transcription factors, which maintain mitochondrial metabolism. Surprisingly PPAR?, implicated in the maintenance of AAM?, was down-regulated on infection. PPAR? expression, however, was maintained. To explain how PPAR-mediated transcriptional activation could be maintained, we used lipidomics to quantify AAM?-derived eicosanoids, potential PPAR ligands. We identified the PPAR? ligand PGI(2) as the most abundant AAM?-derived eicosanoid and propose a PGI(2)-PPAR? axis maintains AAM? during B malayi implantation.
SUBMITTER: Thomas GD
PROVIDER: S-EPMC4314526 | biostudies-literature | 2012 Dec
REPOSITORIES: biostudies-literature
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