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Epigenome-wide association study of Alzheimer's disease replicates 22 differentially methylated positions and 30 differentially methylated regions.


ABSTRACT: BACKGROUND:Growing evidence shows that epigenetic modifications play a role in Alzheimer's disease (AD). We performed an epigenome-wide association study (EWAS) to evaluate the DNA methylation differences using postmortem superior temporal gyrus (STG) and inferior frontal gyrus (IFG) samples. RESULTS:Samples from 72 AD patients and 62 age-matched cognitively normal controls were assayed using Illumina© Infinium MethylationEPIC BeadChip. Five and 14 differentially methylated positions (DMPs) associated with pathology (i.e., Braak stage) with p value less than Bonferroni correction threshold of 6.79?×?10-8 in the STG and IFG were identified, respectively. These cytosine-phosphate-guanine (CpG) sites included promoter associated cg26263477 annotated to ABCA7 in the STG (p?=?1.21?×?10-11), and cg14058329 annotated to the HOXA5/HOXA3/HOXA-AS3 gene cluster (p?=?1.62?×?10-9) and cg09448088 (p?=?3.95?×?10-9) annotated to MCF2L in the IFG. These genes were previously reported to harbor DMPs and/or differentially methylated regions (DMRs). Previously reported DMPs annotated to RMGA, GNG7, HOXA3, GPR56, SPG7, PCNT, RP11-961A15.1, MCF2L, RHBDF2, ANK1, PCNT, TPRG1, and RASGEF1C were replicated (p?

SUBMITTER: Li QS 

PROVIDER: S-EPMC7568396 | biostudies-literature | 2020 Oct

REPOSITORIES: biostudies-literature

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Epigenome-wide association study of Alzheimer's disease replicates 22 differentially methylated positions and 30 differentially methylated regions.

Li Qingqin S QS   Sun Yu Y   Wang Tania T  

Clinical epigenetics 20201017 1


<h4>Background</h4>Growing evidence shows that epigenetic modifications play a role in Alzheimer's disease (AD). We performed an epigenome-wide association study (EWAS) to evaluate the DNA methylation differences using postmortem superior temporal gyrus (STG) and inferior frontal gyrus (IFG) samples.<h4>Results</h4>Samples from 72 AD patients and 62 age-matched cognitively normal controls were assayed using Illumina<sup>©</sup> Infinium MethylationEPIC BeadChip. Five and 14 differentially methyl  ...[more]

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