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Prevalence and genetic diversity of Haemoproteus and Plasmodium in raptors from Thailand: Data from rehabilitation center.

ABSTRACT: The diurnal raptors (Family: Accipitridae and Falconidae) are important as ecosystem bioindicators. Unfortunately, the global number of these birds has fallen, and they are close to extinction. This study reports the molecular prevalence and genetic diversity of Haemoproteus and Plasmodium in raptors admitted to the Kasetsart University Raptor Rehabilitation Unit over a period of 6 years. A total of 198 raptors, including 22 species from 30 provinces in Thailand, were admitted. The prevalence of parasites in raptors was low: Haemoproteus was 4.04% (95% CI: 1.29-6.78), and Plasmodium 2.53% (95% CI: 0.34-4.71). Eleven lineages of haemosporidian parasites were identified, and four lineages (ACCBAD02, NISALB01, NISALB02, and AEGMO03) are new globally. Interestingly, six lineages were isolated from birds belonging to the Accipitridae and Falconidae families (TYTAL4, TYTAL6, GLACUC08, MILANS06, OTUSCO02, and ORW1), indicating host shift of these parasites. Furthermore, the low prevalence of Haemoproteus and Plasmodium in raptors compared with that in previous reports suggests a relationship between the activity of avian hosts and vectors. This information is valuable for application in raptor rehabilitation and further research.

SUBMITTER: Pornpanom P

PROVIDER: S-EPMC8379528 | biostudies-literature | 2021 Dec

REPOSITORIES: biostudies-literature

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Prevalence and genetic diversity of Haemoproteus and Plasmodium in raptors from Thailand: Data from rehabilitation center.

Pornpanom Pornchai P Kasorndorkbua Chaiyan C Lertwatcharasarakul Preeda P Salakij Chaleow C

International journal for parasitology. Parasites and wildlife 20210819

The diurnal raptors (Family: Accipitridae and Falconidae) are important as ecosystem bioindicators. Unfortunately, the global number of these birds has fallen, and they are close to extinction. This study reports the molecular prevalence and genetic diversity of Haemoproteus and Plasmodium in raptors admitted to the Kasetsart University Raptor Rehabilitation Unit over a period of 6 years. A total of 198 raptors, including 22 species from 30 provinces in Thailand, were admitted. The ...[more]

PMID: 34458091

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Project description:BackgroundVarious haemosporidian parasites infect raptors, especially captive hosts who may be more exposed. Diagnosis of threatening factors such as infectious diseases indirectly has a significant role in protecting endangered or threatened species that may boost the mortality or extinction resulting from declined reproduction. Few investigations have been performed in captive hosts to detect the prevalence of haemosporidian parasites and define genetic diversity in west Asia. For the first time, the current study was designed to determine the prevalence and genetic diversity of haemosporidian parasites in captive raptors by molecular methods in two rehabilitation facilities in North and North-east Iran and to define phylogenetic relationships of detected lineages circulating in raptors.ResultsMolecular characterization of the haemosporidian parasite was accomplished by PCR-based method and DNA sequencing in 62 captive raptors. The overall prevalence was ~ 36% with higher infection of Haemoproteus spp. than Leucocytozoon spp. Plasmodium infection was not detected in any host. Results showed that 22 individuals (of 10 species) were infected with unique lineages. Genus Haemoproteus was detected in 26.66% of examined individuals (of eight species) and Leucocytozoon was found in 10% of individuals (of four species). The molecular analysis could detect ten lineages (nine Haemoproteus spp. and one Leucocytozoon spp.) which were categorizes as new and six lineages which have been previously detected in the other investigations.ConclusionsThe Bayesian phylogenetic analysis derived from obtained data in the present study and published lineages in previous investigations indicated the probable host specificity of Haemoproteus and Leucocytozoon parasites in several sub-clades at hosts' order and genus level. As monitoring the parasite loads of captive birds when admitted reduce the risk of infecting hosts in captivity at those locations, we designed this study to determine infection prevalence and genetic diversity of blood parasites in raptors examined in Iran. These results allow mapping of haemosporidian distribution and shed light on the depth of their diversity in Iran to protect species by identification of risk in rehabilitation facilities.

Project description:BACKGROUND: The population structure of the causative agents of human malaria, Plasmodium sp., including the most serious agent Plasmodium falciparum, depends on the local epidemiological and demographic situations, such as the incidence of infected people, the vector transmission intensity and migration of inhabitants (i.e. exchange between sites). Analysing the structure of P. falciparum populations at a large scale, such as continents, or with markers that are subject to non-neutral selection, can lead to a masking and misunderstanding of the effective process of transmission. Thus, knowledge of the genetic structure and organization of P. falciparum populations in a particular area with neutral genetic markers is needed to understand which epidemiological factors should be targeted for disease control. Limited reports are available on the population genetic diversity and structure of P. falciparum in Thailand, and this is of particular concern at the Thai-Myanmar and Thai-Cambodian borders, where there is a reported high resistance to anti-malarial drugs, for example mefloquine, with little understanding of its potential gene flow. METHODS: The diversity and genetic differentiation of P. falciparum populations were analysed using 12 polymorphic apparently neutral microsatellite loci distributed on eight of the 14 different chromosomes. Samples were collected from seven provinces in the western, eastern and southern parts of Thailand. RESULTS: A strong difference in the nuclear genetic structure was observed between most of the assayed populations. The genetic diversity was comparable to the intermediate level observed in low P. falciparum transmission areas (average HS = 0.65 +/- 0.17), where the lowest is observed in South America and the highest in Africa. However, uniquely the Yala province, had only a single multilocus genotype present in all samples, leading to a strong geographic differentiation when compared to the other Thai populations during this study. Comparison of the genetic structure of P. falciparum populations in Thailand with those in the French Guyana, Congo and Cameroon revealed a significant genetic differentiation between all of them, except the two African countries, whilst the genetic variability of P. falciparum amongst countries showed overlapping distributions. CONCLUSION: Plasmodium falciparum shows genetically structured populations across local areas of Thailand. Although Thailand is considered to be a low transmission area, a relatively high level of genetic diversity and no linkage disequilibrium was found in five of the studied areas, the exception being the Yala province (Southern peninsular Thailand), where a clonal population structure was revealed and in Kanchanaburi province (Western Thailand). This finding is particularly relevant in the context of malaria control, because it could help in understanding the special dynamics of parasite populations in areas with different histories of, and exposure to, drug regimens.

Project description:BackgroundPlasmodium vivax infection remains a major public health problem, especially along the Thailand border regions. We examined the genetic diversity of this parasite by analyzing single-nucleotide polymorphisms (SNPs) of the P. vivax rhomboid-like protease 1 gene (Pvrom1) in parasites collected from western (Tak province, Thai-Myanmar border) and eastern (Chanthaburi province, Thai-Cambodia border) regions.MethodsData were collected by a cross-sectional survey, consisting of 47 and 45 P. vivax-infected filter paper-spotted blood samples from the western and eastern regions of Thailand, respectively during September 2013 to May 2014. Extracted DNA was examined for presence of P. vivax using Plasmodium species-specific nested PCR. Pvrom1 gene was PCR amplified, sequenced and the SNP diversity was analyzed using F-STAT, DnaSP, MEGA and LIAN programs.ResultsComparison of sequences of the 92 Pvrom1 831-base open reading frames with that of a reference sequence (GenBank acc. no. XM001615211) revealed 17 samples with a total of 8 polymorphic sites, consisting of singleton (exon 3, nt 645) and parsimony informative (exon 1, nt 22 and 39; exon 3, nt 336, 537 and 656; and exon 4, nt 719 and 748) sites, which resulted in six different deduced Pvrom1 variants. Non-synonymous to synonymous substitutions ratio estimated by the DnaSP program was 1.65 indicating positive selection, but the Z-tests of selection showed no significant deviations from neutrality for Pvrom1 samples from western region of Thailand. In addition McDonald Kreitman test (MK) showed not significant, and Fst values are not different between the two regions and the regions combined. Interestingly, only Pvrom1 exon 2 was the most conserved sequences among the four exons.ConclusionsThe relatively high degree of Pvrom1 polymorphism suggests that the protein is important for parasite survival in face of changes in both insect vector and human populations. These polymorphisms could serve as a sensitive marker for studying plasmodial genetic diversity. The significance of Pvrom1 conserved exon 2 sequence remains to be investigated.

Dataset Information

Prevalence and genetic diversity of Haemoproteus and Plasmodium in raptors from Thailand: Data from rehabilitation center.

Publications

Prevalence and genetic diversity of <i>Haemoproteus</i> and <i>Plasmodium</i> in raptors from Thailand: Data from rehabilitation center.

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