Transcriptomics

Dataset Information

29

Identification of novel monosodium urate crystal-induced mRNAs


ABSTRACT: Objective. To identify novel monosodium urate (MSU) crystal-induced mRNAs by transcript profiling of isolated murine air pouch membranes. Methods. Nine hours after injecting crystals into air pouches, membranes were meticulously dissected away from the adjacent soft tissues. mRNA expression differences between inflamed and control membranes were determined by oligonucleotide microarray analysis. Induction of selected mRNAs was validated by real-time relative quantitative reverse transcriptase PCR (qPCR) in pouch membranes and murine peritoneal macrophages. Results. Eleven of the 12 most highly upregulated mRNAs related to innate immunity and inflammation. They included mRNAs encoding histidine decarboxylase (the enzyme that synthesizes histamine), interleukin (IL)-6, the cell surface receptors PUMA-g and TREM-1, and the polypeptides Irg1 and PROK-2. MSU crystals induced dramatic rises in these mRNAs in the pouch membrane within 3-8 hours after the surge in pro-inflammatory cytokine (IL-6, IL-1beta and TNFalpha) and immediate early gene (Egr-1) transcription, which occurred 1h after crystal injection. MSU crystals induced these mRNAs in cultured macrophages with similar kinetics but lower fold changes. In keeping with their downregulation by MSU crystals according to the microarrays, qPCR confirmed that TREM-2 and granzyme D mRNAs decreased 79% and 94%, respectively, in MSU crystal inflamed membranes. Conclusions. This analysis disclosed several genes previously not implicated in MSU crystal inflammation. Their rise after the early surge in cytokine mRNAs suggests that they may, for instance, amplify or perpetuate inflammation. Transcript profiling of the isolated air pouch membrane promises to be a powerful tool to identify genes acting at different stages of inflammation. Overall design: Mouse strain: female Balb/C, 6-8 weeks old Number of mice= 6. Air pouches raised on back for 7 days by injecting 2ml of sterile air. On day 7, injection of 1ml PBS or 2mg MSU crystals in 1ml PBS (n=3 each) 9 h after injection, dissection of the air pouch membranes from the adjacent soft tissues, RNA extraction with RNeasy columns. Pooling of RNA from the 3 control pouches or the 3 MSU crystal pouches. Processing and labeling of 5ug aliquots in the U Penn microarray core according to standard Affy protocols. Hybridization to Affy Mo430_2 oligonucleotide microarrays.

REANALYSED by: GSE119128

INSTRUMENT(S): [Mouse430_2] Affymetrix Mouse Genome 430 2.0 Array

ORGANISM(S): Mus musculus  

SUBMITTER: Joseph P Menetski  

PROVIDER: GSE11498 | GEO |

SECONDARY ACCESSION(S): PRJNA106315

REPOSITORIES: GEO

Similar Datasets

2008-06-18 | E-GEOD-11498 | ArrayExpress
2010-12-01 | E-MEXP-2905 | ArrayExpress
2014-05-01 | E-GEOD-50788 | ArrayExpress
| GSE65931 | GEO
2014-04-26 | E-GEOD-57111 | ArrayExpress
2013-10-22 | E-GEOD-51466 | ArrayExpress
2015-10-29 | E-GEOD-65931 | ArrayExpress
| GSE47696 | GEO
| GSE84779 | GEO
| GSE67013 | GEO